Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01295 ATGGCTGACCCATATTCCAATTCATTAGCTAGTGTTCTAAAATTCAGCTCCCACCATCACCATTTCCCACAATCACAACCTTCTCCATCTCCCTCACACCTCACTATGTCTCTCAATTGCCTTTCATATCCCTACCCGGATTTGGGATCGGGTTCGGGTTCAGGTTCAGGTTCGCCTCCGCCTTCGTCGCCACCGCTCCGCGAGGCTCTACCGCTTCTCGGGTTGATATCTCCCCCCGAGCAACGGCAGGAGCAAGAGGAAGAAGACGATGGCGGAGACAACGAGGGCAACGACGAGTCGGTGACCGTGGCACTCCACATAGGGCTACCTAGCCCTAGCACAGCGGAGATGGCTTCATCTGAGATTGATCACAGTAATAATAATGATAATCTTGATGATTTTGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTACTCAAATCCTCATTGGTCCTACACAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCACGGCTCTCAGTACAGAAAAGGCCCAGAATCCCTGCGAGGCACGCAGCCAACGGGCATGCTAAGGCTGCCTTGCTACTGCTGCGCGCCAGGGTGCCGCAATAACATCGACCACCCTCGAGCCAAGCCACTCAAAGACTTTAGAACTCTCCAAACACATTACAAGCGCAAGCATGGGCTCAAGCCATTCACGTGCCGCAAATGCGGTAAGGCGTTCGCCGTGCGAGGGGACTGGCGAACTCATGAGAAGAATTGTGGAAAGTTTTGGTATTGCATTTGTGGCTCGGATTTCAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCATGCCGCCTACGGTGTTGGCAGGGTCGACGGTTTCGGAGACGAGGAGGAGGACGACCCCGCTTCGGAAGTCGAGCAGGATAATAACGAGTGA 978 52.86 MADPYSNSLASVLKFSSHHHHFPQSQPSPSPSHLTMSLNCLSYPYPDLGSGSGSGSGSPPPSSPPLREALPLLGLISPPEQRQEQEEEDDGGDNEGNDESVTVALHIGLPSPSTAEMASSEIDHSNNNDNLDDFGQSTKTLIKGQYWIPTPTQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCGKAFAVRGDWRTHEKNCGKFWYCICGSDFKHKRSLKDHVKAFGNDHAAYGVGRVDGFGDEEEDDPASEVEQDNNE 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7333650 7335978 - CmaCh07G012950.1 Cma07g01295 298610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01295 325 MobiDBLite consensus disorder prediction 303 325 - -
Cma07g01295 325 MobiDBLite consensus disorder prediction 19 69 - -
Cma07g01295 325 SUPERFAMILY beta-beta-alpha zinc fingers 227 265 IPR036236 -
Cma07g01295 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 265 IPR013087 -
Cma07g01295 325 PANTHER ZINC FINGER PROTEIN WIP2 14 324 IPR043584 GO:0003700|GO:0010468
Cma07g01295 325 MobiDBLite consensus disorder prediction 19 39 - -
Cma07g01295 325 SUPERFAMILY beta-beta-alpha zinc fingers 156 183 IPR036236 -
Cma07g01295 325 SMART c2h2final6 245 265 IPR013087 -
Cma07g01295 325 SMART c2h2final6 161 183 IPR013087 -
Cma07g01295 325 MobiDBLite consensus disorder prediction 80 99 - -
Cma07g01295 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 188 IPR013087 -
Cma07g01295 325 Gene3D Classic Zinc Finger 160 183 - -
Cma07g01295 325 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Cma07g01295 325 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 14 324 - -
Cma07g01295 325 Gene3D Classic Zinc Finger 223 298 - -
Cma07g01295 325 MobiDBLite consensus disorder prediction 307 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00080 Cma-Chr6:448777 Cma07g01295 Cma-Chr7:7333650 1.89E-129 dispersed
Cma07g01295 Cma-Chr7:7333650 Cma14g00440 Cma-Chr14:2082202 4.83E-130 dispersed
Cma04g02013 Cma-Chr4:12697785 Cma07g01295 Cma-Chr7:7333650 3.01E-107 transposed
Cma03g00093 Cma-Chr3:930592 Cma07g01295 Cma-Chr7:7333650 2.99E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35446 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01295 - - bhj:120074233 503.827