Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g01295 | ATGGCTGACCCATATTCCAATTCATTAGCTAGTGTTCTAAAATTCAGCTCCCACCATCACCATTTCCCACAATCACAACCTTCTCCATCTCCCTCACACCTCACTATGTCTCTCAATTGCCTTTCATATCCCTACCCGGATTTGGGATCGGGTTCGGGTTCAGGTTCAGGTTCGCCTCCGCCTTCGTCGCCACCGCTCCGCGAGGCTCTACCGCTTCTCGGGTTGATATCTCCCCCCGAGCAACGGCAGGAGCAAGAGGAAGAAGACGATGGCGGAGACAACGAGGGCAACGACGAGTCGGTGACCGTGGCACTCCACATAGGGCTACCTAGCCCTAGCACAGCGGAGATGGCTTCATCTGAGATTGATCACAGTAATAATAATGATAATCTTGATGATTTTGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTACTCAAATCCTCATTGGTCCTACACAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCACGGCTCTCAGTACAGAAAAGGCCCAGAATCCCTGCGAGGCACGCAGCCAACGGGCATGCTAAGGCTGCCTTGCTACTGCTGCGCGCCAGGGTGCCGCAATAACATCGACCACCCTCGAGCCAAGCCACTCAAAGACTTTAGAACTCTCCAAACACATTACAAGCGCAAGCATGGGCTCAAGCCATTCACGTGCCGCAAATGCGGTAAGGCGTTCGCCGTGCGAGGGGACTGGCGAACTCATGAGAAGAATTGTGGAAAGTTTTGGTATTGCATTTGTGGCTCGGATTTCAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCATGCCGCCTACGGTGTTGGCAGGGTCGACGGTTTCGGAGACGAGGAGGAGGACGACCCCGCTTCGGAAGTCGAGCAGGATAATAACGAGTGA | 978 | 52.86 | MADPYSNSLASVLKFSSHHHHFPQSQPSPSPSHLTMSLNCLSYPYPDLGSGSGSGSGSPPPSSPPLREALPLLGLISPPEQRQEQEEEDDGGDNEGNDESVTVALHIGLPSPSTAEMASSEIDHSNNNDNLDDFGQSTKTLIKGQYWIPTPTQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCGKAFAVRGDWRTHEKNCGKFWYCICGSDFKHKRSLKDHVKAFGNDHAAYGVGRVDGFGDEEEDDPASEVEQDNNE | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7333650 | 7335978 | - | CmaCh07G012950.1 | Cma07g01295 | 298610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g01295 | 325 | MobiDBLite | consensus disorder prediction | 303 | 325 | - | - | |
Cma07g01295 | 325 | MobiDBLite | consensus disorder prediction | 19 | 69 | - | - | |
Cma07g01295 | 325 | SUPERFAMILY | beta-beta-alpha zinc fingers | 227 | 265 | IPR036236 | - | |
Cma07g01295 | 325 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 245 | 265 | IPR013087 | - | |
Cma07g01295 | 325 | PANTHER | ZINC FINGER PROTEIN WIP2 | 14 | 324 | IPR043584 | GO:0003700|GO:0010468 | |
Cma07g01295 | 325 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - | |
Cma07g01295 | 325 | SUPERFAMILY | beta-beta-alpha zinc fingers | 156 | 183 | IPR036236 | - | |
Cma07g01295 | 325 | SMART | c2h2final6 | 245 | 265 | IPR013087 | - | |
Cma07g01295 | 325 | SMART | c2h2final6 | 161 | 183 | IPR013087 | - | |
Cma07g01295 | 325 | MobiDBLite | consensus disorder prediction | 80 | 99 | - | - | |
Cma07g01295 | 325 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 161 | 188 | IPR013087 | - | |
Cma07g01295 | 325 | Gene3D | Classic Zinc Finger | 160 | 183 | - | - | |
Cma07g01295 | 325 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 163 | 183 | IPR013087 | - | |
Cma07g01295 | 325 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 14 | 324 | - | - | |
Cma07g01295 | 325 | Gene3D | Classic Zinc Finger | 223 | 298 | - | - | |
Cma07g01295 | 325 | MobiDBLite | consensus disorder prediction | 307 | 325 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00080 | Cma-Chr6:448777 | Cma07g01295 | Cma-Chr7:7333650 | 1.89E-129 | dispersed | |
Cma07g01295 | Cma-Chr7:7333650 | Cma14g00440 | Cma-Chr14:2082202 | 4.83E-130 | dispersed | |
Cma04g02013 | Cma-Chr4:12697785 | Cma07g01295 | Cma-Chr7:7333650 | 3.01E-107 | transposed | |
Cma03g00093 | Cma-Chr3:930592 | Cma07g01295 | Cma-Chr7:7333650 | 2.99E-172 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35446 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g01295 | - | - | bhj:120074233 | 503.827 |