Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01299 ATGGCGTCCCTTTTCAGACCGCCATTGTTGATATCCTTAGCCTTTGCTTTCTTCGTTTTGGGTTCTTCTTCGTCTGAGGAATCGACCCTTTTGGCCTTCAAATCTTCCATTGATGATTTGACGAACTCTCTCTCGAACTGGGTTTCTTCTTCTTCTTCTCCGATCCATTTCTGTAACTGGACTGGGATTTCTTGTGTGAGTTCTTCTTCGCCTTCTTCGCTTTCGGTTTCCGCCATTAATCTTCAGGGTTTGAATCTCTCCGGCGAAATTTCATCTTCCATTTGTGAGCTCCCTCGTTTGGTTCATCTTAATCTTGCGGATAATCAGTTCAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGTTCGTTGGAGACTTTGAATCTGAGTAACAATCTCATTTGGGGGACGATCCCCGATCAGATTTCTCTGTTTCGTTCTTTGATTGTTCTTGATTTTGCGAAGAATCATATCGAGGGGAAAATCCCTGAGGGCATTGGGGCTTTGAAGAATCTTCAAGTTCTTAATCTAAGAAGCAACTTGATTTCTGGTAGAGTTCCTTCTGTTATCTTTCATAATCTTACTGAACTTACTGTTCTTGATTTGTCTGAAAATTCTTATCTGATGAGTGATATTCCTAATGAGATTGGGAAGCTTGTGAAGCTTCAAGAGCTATGGCTTCAAAGCTCTGGTTTCCATGGCGAAATCCCTTCTTCTTTGTTGGATTTGAGTAGTCTATCTGTTTTGGATCTTTCTCAGAACAATCTCACTGGAAAACTCCCTGAAATGATGGGTTCTTCTCTGAATAATTTGGTGTTCTTTGATGTTTCTGTGAATAAGCTCATGGGATCTTTCCCAAATGGTTTTTGTAGTGGAAAATCTCTTGTGAGTCTCAGTGTTCATACCAATTTTTTCACTGGAACCTTGCCTGATTCCTTGAATAAATGCTTGAATCTTGAGAGATTTGAAGTTCAGAACAATGGGTTTTCAGGGGATTTTCCTAAATCATTATGGTCATTGCCTAAGATTAAGCTCATTAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCTGAGTCTATATCAATGGCTGCTCATCTTGAGCAAGTTCAGCTTGATAACAATAGTTTTTCGAGTAAGATACCTCGAGGACTTGGGTCGATTCGAAGCTTATACCGATTCTCTGCGTCGCTCAACCTTTTTTATGGTGAATTGCCATCAAACTTCTGTGATTCGCCATTGATGAGTATCATTAATCTGTCCCATAATTCTCTTTCGGGACGGATTCCCGAGCTGAAGAACTGCAAGAAACTCGTCTCTTTGTCCTTAGCAGGCAATAGTTTTACTGGAGTAATACCTACTTCCCTTGCTGATCTACCTGTATTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATCCCTCGAGGACTCGAAAACTTAAAGCTTGCGCTGTTTAACGTTTCGTTCAATCAACTATCGGGTGCTGTTCCATTCTCTTTGATTTCGGGGCTACCTGCTTCATTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCAAGGCCATCCAACAAACCATGTGTCTGGACTTAAGAAAATGACATGTGCTCTCATCTCTATAGCTTGTGTTCTAGGAGTTTTGAGCTTAGCTGCTGGTTTCGTTCTGTATTACCGGTCATTCAAATCGAAATCCCGTGTCGATAACTGGCACTCGGTCTACTTTTACCCTCTTAGAATCAGTGAACATGAGTTGATCATGGGTATGAATGAGAAAACTGCACAAGGACATGGAGGAGCTTTTGGCCAAGTGTTCGTTTTGAGCTTGCCGAGCCGGGAACTGATTGCCGTGAAGAAACTGGTTAACTTTGGGAGTCGTTCGTGGAAATCGTTGAAAGTCGAGGTCGAGACATTGGCCAAGATCAGGCACAAGAACATCATCAAATTTCTGGGGTTTTGCTACTCTGATGATGCCATTTTTCTGATCTATGAATTCTTACACAGAAGAAGCTTGGCTGACTTGATTTGCAGAAATGATTCTTGTCTGAATTGGAATGTGAGACTGAGAATCGCCATTGAGGTTGCTCAAGGACTAGCTTACCTTCACAGGGACTGTGTCCCTCATTTACTTCATCGAAACGTCAAATCGTCGAACATTCTATTGGACGCTGACTTTGTCCCGAAGCTCACGGATTTCGCTCTTCACCATATCGTTGGAGAATCGGCATTTCACTCGACTGTGGCTTCGGAATCTGCTCATTCCTGCTATATTGCACCAGAGTATAAATACAATAAAAAAGCCACAGCGCAAATGGATGTGTACAGCTTTGGTGTCGTGTTGCTAGAACTGGTGACCGGGAGACAAGCCGAGCGATCGGAATCAACTGACTCTCTCGATGTCGTCCAGTGGGTGAGAAGGAAGGTGAACCTAGCCAATGGAGCTTCCCAAGTCCTGGACCCGAGCGTGTCGGAGCAATCCCAACGACAGATGCTGGAAGCTCTAGACATTGCCCTTCAATGCACTTCCATGATGCCCGAAAAACGACCATCAATGCTGGAAGTCGCCAAGGCTCTTCAACTGATCGACTCGACGACAAACCTCCATGACGTAGCCTCCTCGGCTGCGGAGGATGAATCAAAGAAAATTTTTTCCCTCTCTCTCTCCTCCAAACGGATTCACAATCCAAATCAAGAAGTAGTAGAAGAAGAAGAAGGGTTTTTGTTGTTTCCTTTGCCTCGAGGAAATGAATTTGGTATTCTTCTGGAGATGCATAATGTTGAATTTCTTCCTCGAATTTCACGGTTTGAACAGTTAAGAATTATCTTTGTGTTGCAGGAAACTCCGAATGTGGATCTTCCGTCGACGGACAAAGAAGTCGTACCGGAGAAGATTGAAGATGAAGAGATCAACGAGCCTTTGATTCACTGCGAGCTTTGCGATGCGGAACTTGTTCATAAACTCGCTCAGGTTCTCCTTCCTGGATTGTCAACCGCATGCGTCGATAACACTAGTGGCGATATCTTTCGAACCCCTGGTTCCGTGGCTGCCGAAATGAGGAAAGAAATGGTGGATTATATTACTATGAGGAGCGAAATTTGTGTTGCGGAATCCATAATTTTGGATAATGCTCCGGATGCTGAGGTATCTGATCATCCCTACGATATTATCTCTGATTTTGTTGAGGATTTTGCTGCTACGAAGAGAAATTTGTTTAGTAGAGTTTCAGGATGGGTTCTAAGTGAGAAAAGAGAGGATAAGATAGATGATTTTGTTCAAGAAATGGATATTAATGGTTTTTGGCCGCTTGATAGGAGAGAAGCAATTGCTCAAGTTCTGCTTAGGAATGTAGATTTTAAGAGCGAGTTTCATTGTGACCAGAAATTTCATTCTGTAGAAGAGTTAGCTGAACATGTTGTAAACTGTGGATTTAGGTCTCTAATCTGCACAAATGAAGGCTGCACTGCTACATTTTGTGCAAACCACGCAGAACAGCATGATTCAATTTGCCCCTTCAAGATAATTCTATGTGAACAGAAATGTTCTGCCTTCATTATGAGACGCGAAATGGACCGCCATTGCATAACTGATTGTCCTATGAAACTTGTGAACTGCCCCTTCCATAATTTGGGTTGTCAATCCCCTGTTCCTTACAGTTTGATATCGCAGCATTGTTCAGAGAGTTTTGATTCTCATTTGCTGCACATTCTTCACTCTGTACATAAGGAAGCAAATGAAGAGACTCTTAAACATAGACAGCAACAGCTTGAAGAGGCATCATCACTTGACTACCTTAGAGGGCTCCAAAATCTGAGATTATTAACCTCGAAAATCAAAGAAATGGATTCTAAGCTAGGACCATTAGTAGTCATCGGCACGAAGGAGGACACTGAAGAAGCGAAGGACGATGCGTCTAGTGAAACGGATGAAGAGAAGGACAAGTCTAATGCAGCGGACGAAAAGAAGGGCGTGCCTAATGCAGCTGAAGAAACAAAGGACGCCTCCATTTCAACCGAAGAAATGAAGGCCGATGCATCTATTGTAATTCAAGAATGCAACAACTGA 4086 42.71 MASLFRPPLLISLAFAFFVLGSSSSEESTLLAFKSSIDDLTNSLSNWVSSSSSPIHFCNWTGISCVSSSSPSSLSVSAINLQGLNLSGEISSSICELPRLVHLNLADNQFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISLFRSLIVLDFAKNHIEGKIPEGIGALKNLQVLNLRSNLISGRVPSVIFHNLTELTVLDLSENSYLMSDIPNEIGKLVKLQELWLQSSGFHGEIPSSLLDLSSLSVLDLSQNNLTGKLPEMMGSSLNNLVFFDVSVNKLMGSFPNGFCSGKSLVSLSVHTNFFTGTLPDSLNKCLNLERFEVQNNGFSGDFPKSLWSLPKIKLIRAENNGFSGEIPESISMAAHLEQVQLDNNSFSSKIPRGLGSIRSLYRFSASLNLFYGELPSNFCDSPLMSIINLSHNSLSGRIPELKNCKKLVSLSLAGNSFTGVIPTSLADLPVLTYLDLSDNNLTGSIPRGLENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPTNHVSGLKKMTCALISIACVLGVLSLAAGFVLYYRSFKSKSRVDNWHSVYFYPLRISEHELIMGMNEKTAQGHGGAFGQVFVLSLPSRELIAVKKLVNFGSRSWKSLKVEVETLAKIRHKNIIKFLGFCYSDDAIFLIYEFLHRRSLADLICRNDSCLNWNVRLRIAIEVAQGLAYLHRDCVPHLLHRNVKSSNILLDADFVPKLTDFALHHIVGESAFHSTVASESAHSCYIAPEYKYNKKATAQMDVYSFGVVLLELVTGRQAERSESTDSLDVVQWVRRKVNLANGASQVLDPSVSEQSQRQMLEALDIALQCTSMMPEKRPSMLEVAKALQLIDSTTNLHDVASSAAEDESKKIFSLSLSSKRIHNPNQEVVEEEEGFLLFPLPRGNEFGILLEMHNVEFLPRISRFEQLRIIFVLQETPNVDLPSTDKEVVPEKIEDEEINEPLIHCELCDAELVHKLAQVLLPGLSTACVDNTSGDIFRTPGSVAAEMRKEMVDYITMRSEICVAESIILDNAPDAEVSDHPYDIISDFVEDFAATKRNLFSRVSGWVLSEKREDKIDDFVQEMDINGFWPLDRREAIAQVLLRNVDFKSEFHCDQKFHSVEELAEHVVNCGFRSLICTNEGCTATFCANHAEQHDSICPFKIILCEQKCSAFIMRREMDRHCITDCPMKLVNCPFHNLGCQSPVPYSLISQHCSESFDSHLLHILHSVHKEANEETLKHRQQQLEEASSLDYLRGLQNLRLLTSKIKEMDSKLGPLVVIGTKEDTEEAKDDASSETDEEKDKSNAADEKKGVPNAAEETKDASISTEEMKADASIVIQECNN 1361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7366377 7374617 + CmaCh07G012990.1 Cma07g01299 298614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01299 1361 PANTHER OSJNBB0022F23.6 PROTEIN 8 876 - -
Cma07g01299 1361 SUPERFAMILY L domain-like 212 519 - -
Cma07g01299 1361 Gene3D Ribonuclease Inhibitor 191 268 IPR032675 -
Cma07g01299 1361 Coils Coil 1301 1321 - -
Cma07g01299 1361 Gene3D Ribonuclease Inhibitor 269 530 IPR032675 -
Cma07g01299 1361 Pfam Protein kinase domain 607 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01299 1361 Gene3D Transferase(Phosphotransferase) domain 1 675 891 - -
Cma07g01299 1361 Gene3D Phosphorylase Kinase; domain 1 604 674 - -
Cma07g01299 1361 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cma07g01299 1361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1172 1237 IPR013083 -
Cma07g01299 1361 ProSiteProfiles Leucine-rich repeat profile. 461 484 IPR001611 GO:0005515
Cma07g01299 1361 SMART LRR_typ_2 169 193 IPR003591 -
Cma07g01299 1361 SMART LRR_typ_2 459 483 IPR003591 -
Cma07g01299 1361 SMART LRR_typ_2 97 121 IPR003591 -
Cma07g01299 1361 SMART LRR_typ_2 122 145 IPR003591 -
Cma07g01299 1361 SMART LRR_typ_2 194 219 IPR003591 -
Cma07g01299 1361 SMART LRR_typ_2 243 267 IPR003591 -
Cma07g01299 1361 SUPERFAMILY Protein kinase-like (PK-like) 607 877 IPR011009 -
Cma07g01299 1361 MobiDBLite consensus disorder prediction 1303 1361 - -
Cma07g01299 1361 MobiDBLite consensus disorder prediction 1303 1346 - -
Cma07g01299 1361 ProSiteProfiles Zinc finger TRAF-type profile. 1173 1224 IPR001293 GO:0008270
Cma07g01299 1361 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 876 - -
Cma07g01299 1361 ProSiteProfiles Protein kinase domain profile. 598 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01299 1361 Gene3D Ribonuclease Inhibitor 23 190 IPR032675 -
Cma07g01299 1361 Pfam TRAF-type zinc finger 1173 1231 IPR001293 GO:0008270
Cma07g01299 1361 SUPERFAMILY TRAF domain-like 1156 1239 - -
Cma07g01299 1361 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Cma07g01299 1361 Pfam Leucine rich repeat 437 495 IPR001611 GO:0005515
Cma07g01299 1361 SUPERFAMILY L domain-like 24 300 - -
Cma07g01299 1361 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00085 Cma07g01299 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01299 Cma-Chr7:7366377 Cma16g00736 Cma-Chr16:3881525 8.44E-145 dispersed
Cma03g00085 Cma-Chr3:854555 Cma07g01299 Cma-Chr7:7366377 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68727 PF00069 Pkinase 5.00E-37 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01299 - - csv:101222175 1501.49