Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01308 ATGCCCTCCTCCTCCTCCTCCCCATTTTCCTCCTTCCTCACCTTCTTCTCCTTCCTCATTTCCTTCTCCTCCTCTCTCAACTCCGATGGCCTCTCCCTTCTCGCCCTCAAGGCCGCCATTGAAACCGACCCATCTCACGTCCTCGCGTCCTGGTCCGACTCCGACTCCACCCCATGCCACTGGCCTGGAATCCTCTGCACCCGCGACAGAGTCACTCACCTCTCTCTTACCAACAAAGGCCTCACCGGCTACATCCCTTCCGAGCTTGGCCTCCTCGATTCCCTCCAGCGCCTCAGCCTCGCTTTCAACAATTTCTCTAAACCGATTCCGGTTCATCTCTACAACGCCACCAATCTCGTCTTCCTCGACCTCTCTCACAACTCCCTCTCCGGTCCGGTTTCGGATCAAATCGGCGAACTCCGGAATCTCCGGCATCTCGATTTGTCCTCTAATTCCCTCAATGGGTCTCTCCCGAAGCGGCTGACGGAGTTGACGGAACTTGTCGGGACTCTCAATTTGTCCTACAATCGATTCTCCGGCGAGGTTCCGCCGTCGTTTGGGAACCTCCCGCTGATTGTGAATCTCGATGTTCGTCACAATAACCTCACCGGAAAGATTCCGCAGGTGGGTTCGCTGTTGAATCAAGGCCCGACGGCTTTCTCCGGCAACCCAAGTCTTTGTGGGTTTCCGTTACAGACGCTATGTCCGGAAGCTCAGAACCCGAATGTTATCCCTGAGAATCCGCAGAATCCCAAGTCGTTGAACGGTAATTTTCAAGGATACGGCGGAGGGAGAGCTACAAGGGGGAGTGGCGCCGCTGCGACGGTGGCGGTGGTGTCATCAATATTCGCGGTGATGGGGGTTGTGTCGCTGACGGTGTGGTTGTTCCGGAGGAAGGCGGAAGTGAGGAAGCGAGATGTGGGCAAATCGGGAAAGGGGAGTCCGGAGGGGAACAGTGAGGGGGATTTGGAAGGGCAAGACGGTAAATTCGTAGTGATCGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCGTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTGTATAAGGTAGTGGCTGGGCGGGGATCTGGTGCGGCCGCGAGTATTGTAGCTGTAAGGAGACTTAACGATGGTGATGCCACGTTGACGTTCAAGGATTTTGAGTATGAGATGGAGTCCATTAGTAGGGTCCACCATCCCAACATCCTACGGTTGATAGCTCATTACTATGCAATTGATGAGAAATTGGTGGTCACTGATTTCATCAACAATGGAAGCTTGCACTCTGCCTTACATGGAGGCCCCTCCAGTTCTTTGTCACCTCTGCCATGGTCTGCAAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCATATATTCATGAATTCGGTGCTCGGAAGTACGTACATGGAAACATAAAATCGACGAAGATTCTTCTCGACGATGATCTTGAGCCTTACGTTTCAGGTTTCGGACTCACTCGTCTCAGCCAAGGAGCATCCAAAAAGTTAAGCTCAAGCCAGAATATGATCACCACCTCAATCATGGGGCCAAGCATGACAACTCCCTCAGCAATGTACTTAGCGCCAGAGGTTCGTGAGTTTGGAGGGAAGTACACTCAGAAATGCGACGTTTATTCATTTGGTATTGTCCTCCTTGAGCTTTTGAGCGGTCGATTGCCTAATGCAGGCTCGGAGACCGATGGGGGGAAGGGGTTGGAATGTTTCGTGAGGAAGGCGTTTCAAGAAGAGCGCCCCTTGACCGAGATTATAGACCCGGCACTCGTGCCGGAGATTTATGCCAAGAAACAAGTGGTTTCGACATTTCACATTGCGCTGAATTGCACAGAGCTTGATCCCGAGCTTCGTCCTCGAATGCGATTGGTTTCGGAGAGTCTCGATCGAATCAAATCGCAGTGA 1941 52.45 MPSSSSSPFSSFLTFFSFLISFSSSLNSDGLSLLALKAAIETDPSHVLASWSDSDSTPCHWPGILCTRDRVTHLSLTNKGLTGYIPSELGLLDSLQRLSLAFNNFSKPIPVHLYNATNLVFLDLSHNSLSGPVSDQIGELRNLRHLDLSSNSLNGSLPKRLTELTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTLCPEAQNPNVIPENPQNPKSLNGNFQGYGGGRATRGSGAAATVAVVSSIFAVMGVVSLTVWLFRRKAEVRKRDVGKSGKGSPEGNSEGDLEGQDGKFVVIDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSGAAASIVAVRRLNDGDATLTFKDFEYEMESISRVHHPNILRLIAHYYAIDEKLVVTDFINNGSLHSALHGGPSSSLSPLPWSARLKIAQGAARGLAYIHEFGARKYVHGNIKSTKILLDDDLEPYVSGFGLTRLSQGASKKLSSSQNMITTSIMGPSMTTPSAMYLAPEVREFGGKYTQKCDVYSFGIVLLELLSGRLPNAGSETDGGKGLECFVRKAFQEERPLTEIIDPALVPEIYAKKQVVSTFHIALNCTELDPELRPRMRLVSESLDRIKSQ 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7405894 7410077 + CmaCh07G013080.1 Cma07g01308 298623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01308 646 Pfam Protein tyrosine and serine/threonine kinase 352 638 IPR001245 GO:0004672|GO:0006468
Cma07g01308 646 PRINTS Leucine-rich repeat signature 119 132 - -
Cma07g01308 646 PRINTS Leucine-rich repeat signature 140 153 - -
Cma07g01308 646 SUPERFAMILY L domain-like 27 233 - -
Cma07g01308 646 MobiDBLite consensus disorder prediction 305 325 - -
Cma07g01308 646 Gene3D Phosphorylase Kinase; domain 1 331 427 - -
Cma07g01308 646 Gene3D Transferase(Phosphotransferase) domain 1 428 646 - -
Cma07g01308 646 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cma07g01308 646 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 646 - -
Cma07g01308 646 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Cma07g01308 646 ProSiteProfiles Protein kinase domain profile. 346 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01308 646 SUPERFAMILY Protein kinase-like (PK-like) 351 638 IPR011009 -
Cma07g01308 646 Gene3D Ribonuclease Inhibitor 169 237 IPR032675 -
Cma07g01308 646 Gene3D Ribonuclease Inhibitor 26 168 IPR032675 -
Cma07g01308 646 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 9 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01308 Cma-Chr7:7405894 Cma18g00707 Cma-Chr18:6442392 2.63E-170 dispersed
Cma03g00081 Cma-Chr3:799037 Cma07g01308 Cma-Chr7:7405894 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68728 PF07714 PK_Tyr_Ser-Thr 1.40E-26 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01308 - - csv:101212426 991.875