Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01320 ATGGCTGAAAGAGGAGGAGGAGACCGCGGTGGCTTCGGCAGAGGTTTTGGCGGCAGAGGTCGTGGTGGCGACCGTGGCCGTGGCCGTCGTCGTGCTGGCCGCCGTGACGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTAGGGCGGCTCGTCAAGGAAGGTAAGATTCAGTCACTTGAACAGATTTACCTCCACTCTCTCCCAATCAAGGAGCACCAAATCGTAGATACTCTCATCGGACCTAGCCTCAAGGATGAGGTTATGAAGATCATGCCGGTGCAAAAACAGACCCGGGCCGGACAGAGGACCCGTTTTAAGGCCTTTGTTGTCGTCGGTGACGGCAATGGCCATGTTGGATTGGGAGTTAAGTGCAGCAAGGAGGTTGCTACTGCTATTCGTGGTTCGATTATTTTGGCCAAGTTGTCAGTGATCCCTGTGAGGAGGGGTTACTGGGGTAACAAGATCGGTAAGCCTCATACTGTGCCTTGCAAGGTTACTGGAAAGTGTGGCTCTGTTACAGTACGTATGGTTCCTGCTCCTCGTGGTGCTGGTATCGTCGCGGCTAGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGAATTGATGATGTTTTCACTTCTTCCAGGGGATCAACTAAGACACTTGGAAACTTTGTGAAGGCTACCTTTGATTGCCTATTGAAAACCTATGGTTTCCTGACACCCGAGTTCTGGAAGGAGACTCGCTTCACAAAATCTCCATTCCAAGAGCACACGGATCTGTTGGCTAAACCTACTGTGAAGGCATTGTTGTTGGATGATGCCGAGAGGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAACTGATAGGCGTGATGTTACTGTTGTCATCTGTCCGCTCTGTGCCAAAGGAGTTCGTCTCATTCCAGATCAAGACCCGAACATTACGTGGGAGATTCACGTAAACACTGAATGTGATCCTTCAAATTATGATAAAGTTACAAAGAAGAAAAAGTGCCCTGTACCTGGCTGCAGGGAGTTGTTAACGTTTTCAAACACGATTAAGTGCCGGGACTGCTTGGTAGACCATTGTTTGAAGCACCGGTTTGGACCCGACCATAAGTGTTCGGGACCGAAAAAACCAGAACCTGCTGGTTTTCCATTTGTTGGTCTTCTAAGTCGAAGTAGAAAAGAAGAGAAAGGCCCTAAGAAAGCATTGCCCCCCACAACATCTTCCTCTAGTTGGACTACATCCCTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCGGGCATGACGAAGTTGTCGAATGAAATCAATCATGCTTGGAAAACAAAAAGCAGCAGCAGCAGCAACAATGGAAGTGCGAATAGACAAATCGAGCAATGTCCACAGTGTGGTGCTAAGTTTTCATCAGTTTCATCGTTAATAGACCATGTCGAAAAAGTCCACGAAAAGGGTGGCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGTAGAGGATTTGTTGATCCTGTCGCCCTCGTGGAGCATATCGAGAGGGAGCATGGTGTTCATCCAAAAATTAATATGATATGA 1596 48.56 MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKALLLDDAERVFCLEHRSYNRHSCPKTDRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEPAGFPFVGLLSRSRKEEKGPKKALPPTTSSSSWTTSLLNAASSVKASAEAGMTKLSNEINHAWKTKSSSSSNNGSANRQIEQCPQCGAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIEREHGVHPKINMI 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7477968 7484293 + CmaCh07G013200.1 Cma07g01320 298635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01320 531 Gene3D - 317 383 IPR035896 -
Cma07g01320 531 Pfam Ribosomal protein S5, N-terminal domain 83 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma07g01320 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 461 484 IPR013087 -
Cma07g01320 531 SUPERFAMILY AN1-like Zinc finger 329 379 IPR035896 -
Cma07g01320 531 Pfam C2H2-type zinc finger 462 484 - -
Cma07g01320 531 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma07g01320 531 SUPERFAMILY dsRNA-binding domain-like 79 148 - -
Cma07g01320 531 MobiDBLite consensus disorder prediction 1 38 - -
Cma07g01320 531 ProSitePatterns Zinc finger C2H2 type domain signature. 501 522 IPR013087 -
Cma07g01320 531 Pfam Ribosomal protein S5, C-terminal domain 167 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Cma07g01320 531 SUPERFAMILY Ribosomal protein S5 domain 2-like 159 239 IPR020568 -
Cma07g01320 531 TIGRFAM uS5_euk_arch: ribosomal protein uS5 36 243 IPR005711 GO:0003735|GO:0006412|GO:0015935
Cma07g01320 531 Pfam AN1-like Zinc finger 337 377 IPR000058 GO:0008270
Cma07g01320 531 Gene3D Classic Zinc Finger 427 529 - -
Cma07g01320 531 Gene3D - 146 239 IPR014721 -
Cma07g01320 531 SMART c2h2final6 335 365 IPR013087 -
Cma07g01320 531 SMART c2h2final6 461 484 IPR013087 -
Cma07g01320 531 SMART c2h2final6 499 522 IPR013087 -
Cma07g01320 531 MobiDBLite consensus disorder prediction 393 412 - -
Cma07g01320 531 PANTHER RIBOSOMAL S SUBUNIT 1 269 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma07g01320 531 ProSitePatterns Zinc finger C2H2 type domain signature. 463 484 IPR013087 -
Cma07g01320 531 ProSiteProfiles Zinc finger AN1-type profile. 331 381 IPR000058 GO:0008270
Cma07g01320 531 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 269 - -
Cma07g01320 531 Gene3D - 40 145 - -
Cma07g01320 531 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00050 Cma-Chr6:270433 Cma07g01320 Cma-Chr7:7477968 4.76E-17 dispersed
Cma07g00236 Cma-Chr7:1085576 Cma07g01320 Cma-Chr7:7477968 1.69E-14 dispersed
Cma07g01320 Cma-Chr7:7477968 Cma14g00478 Cma-Chr14:2335898 7.22E-153 dispersed
Cma03g00071 Cma-Chr3:646816 Cma07g01320 Cma-Chr7:7477968 1.13E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35447 PF03719 Ribosomal_S5_C 2.80E-23 CL0329 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01320 K02981 - cmax:111466071 512.686