Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01323 ATGGCCTCTTTGTGTTGTTATCTCTTCATTTTGGTTCTTGGGTTTCTTTCAAATTCCCAGTTTCTGGTAGCTGAGCTTGATGATCAAATCATCATGTCCTCCATTAGAGAGGACCTTCAAGTTCTTGGCTGGAGCTCAAACATCTCAGATTACTGTTCTTGGAAAGGTGTTCGTTGTGGTTTGAATCATTCCATGGTTGAAGCTCTTGATCTTTCTGGTCACTCTCTTAGAGGTAATCTAACTGTGATTTCTCAGCTCAAGGCTTTGAAATGGCTGGATCTTTCCTTCAATGACTTCCATGGAAAAATTCCATCGAGTTTTGCTAACTTATTCGAGCTCGAATTTCTCGATTTGTCTTTGAACAAGTTCGATGGCTCCATCCCGCCCGAGCTTGGTGGTTTGAAGAACCTCAAGTCATTGAATCTCTCCAATAATCTACTGGTGGGAGAGATTCCAGATGAGCTTCAAGGCTTAGAGAATTTGAGGGATTTTCAAGTTTCTAGCAACAGATTGAATGGTTCAATCCCAATGTGGGTTGGGAATTTCACTCATCTTAGAGTTTTTACAGCCTATGAGAATGCCTTTGATGGTGTAATCCCTGATAATCTAGGCTTGGTTTCTGAACTTCAAGTGTTGAATCTGCATACTAATAAGCTTGAAGGCCCGATTCCTCGAAGCGTCTTCGCTTCGGGGAAGCTCGAGATTTTGGTTCTAACACAAAACAGATTGAATGGGAATCTTCCTGAAGAGATTGGGAACTGTAAAAGCCTTACTAGCGTTCGAATCGGGAACAACGACCTTGTTGGTGTTGTTCCTCCTGCCATTGGAAATGTTAGTAGCCTTGCTTACTTTGAAGTGAATAACAATCACCTTTCGGGCGATATAACGTCTCGGATATCGCTGTGCTCTAATCTTACTTTGCTGAATCTAGCCTCGAATGGATTCACCGGGACAATTCCTTCTGAGCTTGGAGAACTGATGAATCTGCAGGAACTTATTCTTTCTGGCAACAATCTGTATGGTGATATTCCAAGATCAATGCTCAAGTGTAAGAATCTCAACAAGCTTGATTTGAGCAACAATAGATTTAACGGTACTATTCCTTCAGATATCTGCAATGTATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATCAAAGGAGAGATACCTAATGAGATCGGAAAATGTACAAAGCTTCTCGACCTCCGACTCGGAAGTAACTACTTAACTGGAAGCATCCCTTCGGAGATCGGTCGGATTAAGAATTTACAGATAGCTTTGAACTTGAGTTTCAACCATTTAAATGGACCAGTGCCTCCTGAGTTGGGGAAGCTCGATAAACTGGTCTCGTTAGATTTGTCGAACAATCATCTCTCGGGCGATATCCCTTCCGAACTCAAGGGCATGTTAAGCCTGATAGAGGTGAATTTTTCGAATAATCTGCTTACTGGTTCGATTCCTTTTTTTGTTCCATTCCAGAAAAGTGCAAATTCTAGTTTTCTAGGGAATGATGGCCTTTGCGGGGCGCCATTAAGCATTTCGTGTAAAAACTCGATCGGGTCATACAATCAAGATTACCATCACAAGGTCTCTTACAAGATCATACTAGCTGTCATCGGTTCCGGGCTGGCAGTCTTCGTATCAGTAACTATAGTTGTTTTACTTTTTGTAATGAAGGAAAAGCAGGAAAAGACAGCTAAATCTTCAGGGACTGCAGATGATGCAACCGTCGATGATCAACCGATTATAATATCAGGAAACGTCTTCGATGATAATCTCCGACAGGAAATAGATCTCGACGCAGTCGTTAAAGCAACGTTGAAGGATTCGAACAAGCTCATCTTTGGCACTTTCAGCACGGTTTACAAGGCAGTTATGCCTTCGGGTATGATCATATCAGTTAAGAGACTAAAATCCATGGATAAGACAATCATTCATCATCAAAGCAAGATGATCAGAGAGCTTGAAAGGCTTGGTAAACTGAGTCATGCTAATCTTCTGCAGCTCATTGGATATGTAATATATGAAGATGTGGCTCTGTTGCTTCATCATTATCTACCCAATGGGACATTGGCTCAGCTGCTTCACGAGTCCACAAAACAACCCGAGTATCAACCTGATTGGCCAACACGATTTTCGATAGCCATTGGAGCAGCAGAAGGGCTTGCTTTTCTTCATCATGTGGCTATAATTCATCTTGATATTTCATCATCTAATGTTCTTTTAGATGCAAACTTCAAACCTTTGGTTGGAGAGGTTGAGATCTCAAAGCTTCTCGATCCATCAAGAGGAACTGCTAGCATTAGTGCAGTGGCTGGTTCATTTGGCTACATTCCACCAGAATATGCGTACACGATGCAAGTTACGGCACCTGGAAATGTTTATAGCTACGGTGTTATCTTGCTTGAGATCCTCACTACCAGACTTCCAGTTGATGAGGAGTTTGGTGAAGGGGTAGACTTGGTGAAGTGGGTGCATGGTGCTTCGTCAAGGGGCGAAACGCCTGAACAGATACTTGATTCCCAGCTGAGCACGGTGTCGTTTGGATGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCGTTGCTATGCACTGATAGCATACCAGCCAAAAGGCCGAAAATGAAGGTGGTGGTGGAAATGCTTATGGAGATCAAGCAAAATTGA 2673 42.46 MASLCCYLFILVLGFLSNSQFLVAELDDQIIMSSIREDLQVLGWSSNISDYCSWKGVRCGLNHSMVEALDLSGHSLRGNLTVISQLKALKWLDLSFNDFHGKIPSSFANLFELEFLDLSLNKFDGSIPPELGGLKNLKSLNLSNNLLVGEIPDELQGLENLRDFQVSSNRLNGSIPMWVGNFTHLRVFTAYENAFDGVIPDNLGLVSELQVLNLHTNKLEGPIPRSVFASGKLEILVLTQNRLNGNLPEEIGNCKSLTSVRIGNNDLVGVVPPAIGNVSSLAYFEVNNNHLSGDITSRISLCSNLTLLNLASNGFTGTIPSELGELMNLQELILSGNNLYGDIPRSMLKCKNLNKLDLSNNRFNGTIPSDICNVSRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNDGLCGAPLSISCKNSIGSYNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKTAKSSGTADDATVDDQPIIISGNVFDDNLRQEIDLDAVVKATLKDSNKLIFGTFSTVYKAVMPSGMIISVKRLKSMDKTIIHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHHYLPNGTLAQLLHESTKQPEYQPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHGASSRGETPEQILDSQLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKVVVEMLMEIKQN 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7489953 7493024 - CmaCh07G013230.1 Cma07g01323 298638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01323 890 Gene3D Transferase(Phosphotransferase) domain 1 688 890 - -
Cma07g01323 890 Gene3D Phosphorylase Kinase; domain 1 579 687 - -
Cma07g01323 890 CDD STKc_IRAK 618 887 - -
Cma07g01323 890 Gene3D Ribonuclease Inhibitor 170 229 IPR032675 -
Cma07g01323 890 SMART LRR_typ_2 134 157 IPR003591 -
Cma07g01323 890 SMART LRR_typ_2 86 109 IPR003591 -
Cma07g01323 890 SMART LRR_typ_2 206 230 IPR003591 -
Cma07g01323 890 SMART LRR_typ_2 326 350 IPR003591 -
Cma07g01323 890 SMART LRR_typ_2 110 133 IPR003591 -
Cma07g01323 890 SMART LRR_typ_2 447 470 IPR003591 -
Cma07g01323 890 SMART LRR_typ_2 374 398 IPR003591 -
Cma07g01323 890 SUPERFAMILY L domain-like 271 514 - -
Cma07g01323 890 Gene3D Ribonuclease Inhibitor 28 169 IPR032675 -
Cma07g01323 890 SUPERFAMILY L domain-like 43 344 - -
Cma07g01323 890 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 888 - -
Cma07g01323 890 Gene3D Ribonuclease Inhibitor 230 520 IPR032675 -
Cma07g01323 890 Pfam Leucine Rich Repeat 89 110 IPR001611 GO:0005515
Cma07g01323 890 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515
Cma07g01323 890 Pfam Leucine rich repeat 132 171 IPR001611 GO:0005515
Cma07g01323 890 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Cma07g01323 890 SUPERFAMILY Protein kinase-like (PK-like) 610 886 IPR011009 -
Cma07g01323 890 Pfam Protein kinase domain 613 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01323 890 ProSiteProfiles Protein kinase domain profile. 609 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01323 890 ProSitePatterns Tyrosine protein kinases specific active-site signature. 732 744 IPR008266 GO:0004672|GO:0006468
Cma07g01323 890 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 8 888 - -
Cma07g01323 890 PRINTS Leucine-rich repeat signature 353 366 - -
Cma07g01323 890 PRINTS Leucine-rich repeat signature 447 460 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00068 Cma07g01323 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01323 Cma-Chr7:7489953 Cma14g01866 Cma-Chr14:13232403 2.86E-72 dispersed
Cma01g00920 Cma-Chr1:5585414 Cma07g01323 Cma-Chr7:7489953 1.17E-152 transposed
Cma03g00068 Cma-Chr3:636694 Cma07g01323 Cma-Chr7:7489953 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68730 PF00069 Pkinase 1.40E-26 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01323 - - csv:101215786 1575.45