Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g01364 | ATGGGATCTTCTGTTGCTGCAATGGGCATGGTTTCCGACTCCAAATTCCATGTTCTTGCTGTTGATGACAGCGTCATCGATCGGAAATTGATTGAGCGTCTCCTTAAAACCTCCTCTTTTCAAGTAACTACGGTTGATTCTGGGAGTAAGGCTTTGGAGTTTTTGGGGTATGATCCTGGAAATAACTCGATTCCCTATGTTTCTCCTAGCCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGGGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCCAAGGCTTTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAGTTCTTCTTGAAACCGGTCCGACTTTCGGACGTCAACAGGCTTAAACCCCACATGTTGAAAACGAAACTCAAATGTGACAAACCAGAAAGAACAGAGGAAGATGAGCCTGATTCAGGAAGCCAACCCCAAGCACCAGAGCAACAACATCATGAACAACATGAACAACATGAACAACATGAACATGGACAAGAAGAATTACGATCGCAACCGCAATCGCAGCAGGTGCCAACGCCACCGCAAGATCAAGATCAAGATCGATTGCAATCGGTACCGGTGTTACCAACGCCGCAACAGGAGCAAGAACAGTTGCAATTGCTCCAGCCAACACCGCCGCAACAATCGAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCACCAGATAGAACAAGGCCTAGATACAGTGGTATTACAACCATGGTGTAG | 870 | 46.09 | MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSFQVTTVDSGSKALEFLGYDPGNNSIPYVSPSHHHHHHHHHHHHHHHHHHQEVDVNLVITDYCMPGMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLKPHMLKTKLKCDKPERTEEDEPDSGSQPQAPEQQHHEQHEQHEQHEHGQEELRSQPQSQQVPTPPQDQDQDRLQSVPVLPTPQQEQEQLQLLQPTPPQQSNNNKRKAMEDGLSPDRTRPRYSGITTMV | 289 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7780371 | 7782099 | - | CmaCh07G013640.1 | Cma07g01364 | 298679 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g01364 | 289 | ProSiteProfiles | Response regulatory domain profile. | 17 | 166 | IPR001789 | GO:0000160 | |
| Cma07g01364 | 289 | MobiDBLite | consensus disorder prediction | 169 | 289 | - | - | |
| Cma07g01364 | 289 | MobiDBLite | consensus disorder prediction | 194 | 213 | - | - | |
| Cma07g01364 | 289 | SUPERFAMILY | CheY-like | 14 | 165 | IPR011006 | - | |
| Cma07g01364 | 289 | MobiDBLite | consensus disorder prediction | 69 | 88 | - | - | |
| Cma07g01364 | 289 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE | 220 | 287 | - | - | |
| Cma07g01364 | 289 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE | 11 | 211 | - | - | |
| Cma07g01364 | 289 | Gene3D | - | 17 | 279 | - | - | |
| Cma07g01364 | 289 | MobiDBLite | consensus disorder prediction | 66 | 89 | - | - | |
| Cma07g01364 | 289 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 220 | 287 | IPR045279 | GO:0009736 | |
| Cma07g01364 | 289 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 11 | 211 | IPR045279 | GO:0009736 | |
| Cma07g01364 | 289 | MobiDBLite | consensus disorder prediction | 169 | 184 | - | - | |
| Cma07g01364 | 289 | CDD | REC_typeA_ARR | 18 | 161 | - | - | |
| Cma07g01364 | 289 | SMART | REC_2 | 16 | 165 | IPR001789 | GO:0000160 | |
| Cma07g01364 | 289 | Pfam | Response regulator receiver domain | 87 | 157 | IPR001789 | GO:0000160 | |
| Cma07g01364 | 289 | MobiDBLite | consensus disorder prediction | 214 | 268 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma03g00130 | Cma07g01364 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01600 | Cma-Chr4:8080872 | Cma07g01364 | Cma-Chr7:7780371 | 5.72E-52 | dispersed | |
| Cma07g01364 | Cma-Chr7:7780371 | Cma14g00515 | Cma-Chr14:2564303 | 1.31E-77 | dispersed | |
| Cma10g00154 | Cma-Chr10:701443 | Cma07g01364 | Cma-Chr7:7780371 | 4.05E-48 | dispersed | |
| Cma03g00130 | Cma-Chr3:1360782 | Cma07g01364 | Cma-Chr7:7780371 | 4.41E-134 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35451 | PF00072 | Response_reg | 4.90E-14 | CL0304 | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g01364 | K14492 | - | csv:101220999 | 397.897 |