Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00001 ATGGATTTTCTCACAAAATCAAAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAATCCCGACTGTTGCATGCGATTTCTTCACAAATTCCCACTCTCAAAACCACCACCACTGCGTTCAACACCCTCCAAATCACTCCCAAAATCAGCACCCTCCCATGGAATTGTCCCTCAGAATTGACTCCAACAACAATGGGTTTGCGGTTGAGAGAGAGCACATGTTCGACAAAGTGGTCACTCCAAGCGATGTCGGAAAATTAAACCGTCTTGTCATCCCAAAGCAACACGCCGAAAAATACTTCCCTCTCAACTCAACAACCAACGACAAGGGCCTCATCTTGAACTTCGAGGACCGTAACGGCAAACCCTGGCGCTTCCGTTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACAAAAGGCTGGAGCCGTTTTGTGAAAGACAAGAAATTGGATGCAGGCGACGTGGTTTCCTTCCAGCGTGGCGTTGGCGATTTCGCCAAGGACCGCCTTTTCATTGACTGGCGCCACCGTTCCGACACATCTCGCCCTCACCCACTCCTCCTCCTCCCACAGTCTCTTCGGTGGGCATCTGACCGCCACTTTATTCTCCCACCTCCGCCGCCACTGCAGCCCAGACGAACCCACCACCATCTCTATCCCAATTACGCCTTAGAAATGTCAAATTTGGGGATGGGCAGTAACGGTAGTAATAATAATTCTTCCATGTATTATTTTCAACCCTCCATTTCCTCTTCTACTTCCTCCTCTCTCTATAGGATGCGGAATGGGGATGGGATTGTGGTAAATAATGAAGGCTGTTCGGTGGGGATTAACAAAGGCGGCTCCGGCGGCACGACCGCCAAACGACTCCGCCTGTTTGGAGTGAATATGGAGTGTGCTGCAGCTGATGGAGAAGGAGGTGGAGGAGGAGAGCATGATGTTCCAAACGGCGGCGCTTCGAGGAGAGGGAAAGAGCCCTTGTCGTTGAATTGGGATGAGTGA 1035 50.53 MDFLTKSKQEEEEEEEEEEEEEEEEEEEIPTVACDFFTNSHSQNHHHCVQHPPNHSQNQHPPMELSLRIDSNNNGFAVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLNSTTNDKGLILNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFQRGVGDFAKDRLFIDWRHRSDTSRPHPLLLLPQSLRWASDRHFILPPPPPLQPRRTHHHLYPNYALEMSNLGMGSNGSNNNSSMYYFQPSISSSTSSSLYRMRNGDGIVVNNEGCSVGINKGGSGGTTAKRLRLFGVNMECAAADGEGGGGGEHDVPNGGASRRGKEPLSLNWDE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7522 8556 - CmaCh08G000010.1 Cma08g00001 298696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00001 344 Pfam B3 DNA binding domain 84 188 IPR003340 GO:0003677
Cma08g00001 344 Gene3D - 77 196 IPR015300 -
Cma08g00001 344 SUPERFAMILY DNA-binding pseudobarrel domain 81 172 IPR015300 -
Cma08g00001 344 MobiDBLite consensus disorder prediction 313 344 - -
Cma08g00001 344 ProSiteProfiles B3 DNA-binding domain profile. 84 189 IPR003340 GO:0003677
Cma08g00001 344 MobiDBLite consensus disorder prediction 9 29 - -
Cma08g00001 344 CDD B3_DNA 82 171 IPR003340 GO:0003677
Cma08g00001 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 18 313 - -
Cma08g00001 344 SMART B3_2 84 189 IPR003340 GO:0003677
Cma08g00001 344 Coils Coil 1 29 - -
Cma08g00001 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 313 IPR044800 GO:0003700
Cma08g00001 344 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00001 Cma-Chr8:7522 Cma17g00554 Cma-Chr17:4493889 5.83E-131 dispersed
Cma08g00001 Cma-Chr8:7522 Cma04g00739 Cma-Chr4:3757346 3.49E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35454 PF02362 B3 1.50E-28 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00001 - - cmos:111436350 379.022