Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00010 ATGGGCTGCTTTCCCTGTTTCGATTCGAGGGAAGAGGAGAAGCTGAATCCCGAAAAGGAAAGCGATGATGGTAAGCAACACCATCCAATGATTCCACCCAACATTGCCAAATTGCCTTCTGGAATAGACAAACTTAGATCAAAAGGCAATGGTGGTTCCAAAAGGGAACAGCAGAATCCCAAGGATGGGCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGGGAGCTTGCAATTGCAACCAAGAATTTTAGACCTGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGCCTCGAAAGCTCAGGCCAGATTGTTGCTGTAAAACAGTTGGATAGGAATGGTCTTCAAGGAAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCAGATGGGGATCAACGGCTTCTTGTATATGAGTTCATGCCTTTGGGATCGTTGGAAGATCATCTTCATGAAATTCCACCTGATAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGAGGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCCAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAGTACGCCATGACCGGACAATTGACCATCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATAACTGGACGGAGAACCATTGATAGCACCCGGCCCCAAGGTGAACAGAACCTTGTCACATGGGCACGCCCATTTTTTAACGACCGCAGAAGATTCTCAAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTGTACCAGGCTCTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCAGCCCGTCCGCTGATTGGAGACGTGGTCACTGCCCTCTCATACTTGGCAAATCAATCCTATGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTGCTCAGAAAGGTTCTGGTGATCGGGACGAAAGACGGAACAGAGACGAGAAAGTTGCAGTAAAGAATGAAGAAGGGGGAGCATGTGAACGAAGGTGGACATTGGATGGTCCGGGGAAGGACGAGTCCCCAAGGGAGACTGGTAGGATTTTGAATAAGGATTCAGAGAGAGAACGTGCAGTGGCTGAGGCGAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGGCGACAGAGCGCACAAGGCAGTTTTGATGGTTCGAATGGGTAA 1401 47.04 MGCFPCFDSREEEKLNPEKESDDGKQHHPMIPPNIAKLPSGIDKLRSKGNGGSKREQQNPKDGPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESSGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTIKSDVYSFGVVFLELITGRRTIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAAQKGSGDRDERRNRDEKVAVKNEEGGACERRWTLDGPGKDESPRETGRILNKDSERERAVAEAKMWGENWREKRRQSAQGSFDGSNG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 56342 60584 + CmaCh08G000100.1 Cma08g00010 298705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00010 466 Pfam Protein kinase domain 90 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00010 466 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Cma08g00010 466 Gene3D Transferase(Phosphotransferase) domain 1 162 376 - -
Cma08g00010 466 PANTHER OS07G0668900 PROTEIN 422 460 - -
Cma08g00010 466 PANTHER OS07G0668900 PROTEIN 2 404 - -
Cma08g00010 466 SUPERFAMILY Protein kinase-like (PK-like) 62 359 IPR011009 -
Cma08g00010 466 MobiDBLite consensus disorder prediction 383 439 - -
Cma08g00010 466 MobiDBLite consensus disorder prediction 52 66 - -
Cma08g00010 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Cma08g00010 466 Gene3D Phosphorylase Kinase; domain 1 48 161 - -
Cma08g00010 466 CDD STKc_IRAK 91 359 - -
Cma08g00010 466 MobiDBLite consensus disorder prediction 7 27 - -
Cma08g00010 466 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 2 404 - -
Cma08g00010 466 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 422 460 - -
Cma08g00010 466 MobiDBLite consensus disorder prediction 1 66 - -
Cma08g00010 466 MobiDBLite consensus disorder prediction 366 439 - -
Cma08g00010 466 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00010 Cma-Chr8:56342 Cma14g01637 Cma-Chr14:12259054 0 dispersed
Cma16g00856 Cma-Chr16:5061478 Cma08g00010 Cma-Chr8:56342 4.73E-159 dispersed
Cma17g01252 Cma-Chr17:8548329 Cma08g00010 Cma-Chr8:56342 1.07E-154 dispersed
Cma01g00948 Cma-Chr1:6020324 Cma08g00010 Cma-Chr8:56342 1.74E-147 transposed
Cma17g01421 Cma-Chr17:9377727 Cma08g00010 Cma-Chr8:56342 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68733 PF00069 Pkinase 1.20E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00010 K13430 - csv:101219880 872.848