Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00030 ATGGAGCGGTGCCTGGTAGCTGGGTTCTGTTTATGGTTCACTCTCGCATTTGTGATTGCAGACGAAAACAAATCCTCTGTGGGATCTTTAATCTGGTCTTCCGCAAAAGAAGAGGGCGATCTCCTTATCCAGTACAGGCCAGAGGAAGATTCCACCGCTGCTGCACCTGTCGCTCACGATGCTGATGGCTTTGATGGCGGCTTTTCTTCCCTGGATAGCATGTTACAGTGGGCTATAGGGCATTCTAATCCTGAAAAACTAAAGGAAACTGCCCAGGATGTGAAGCAATTGTCTCCAAGTGAGCTAAAGAAGCGTCAGGAAGAAATTAAGGACCTAATGGAGAAGTTGAAGATGCCATCAGATGCAAAGCTGATGCAAATTGCGTTAGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGGTATCGCGCATTACAGGAGCTTTTAATTCTTGTTGAGCCTATAGATAATGCAAATGATTTGGGGAAACTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATATTGATCCTGAAGTTAGAAAAGTGGCAGCATGGATTCTTGGAAAAGCCAGTCAGAATAACCCTATTGTTCAAAAGCAGGTATTGGAACTCGGGGCACTGTCAAAATTAGTAAGGATGGCGAAATCTGATTTTGTAGAAGAAGCCATCAAAGCGTTTTATGCTATTTCCTCCTTGGTTCGAAATAATTTATCTGGCCAGGAATTATTCTATGCCGCAGCTGGAGAAACTATGCTTCAGGATATTCTAAGAAACTCAAGCATGGATATCAGATTGCAAAAGAAAGCTGTGTTTTTGGTAAGTGATCTGGCTGAGACACAACTAGAAAAAGCAGATGAAGCTGAGAGGTCATTTTTTGGTGATCGTTTTTTCTTGAAGTCTGTGGTTGATCTAACCCATTCGAAGGACATTGACCTCCAGGAGAAGGCCCTCATTGCTATAAAGAACCTGTTGCTTCTGAGGACAACGAAAGCCCAAGTTTTAAGAGAATTTTGTGGGCTGGATATTGCTTTGGAGAGGATGAGGGTGAAACTGGAGGTATTAATGGAAGAGGAAGATCACCGAGATTATGCTATGGATGTGGAAAGTCTACGAAACCAAGTGGAGTTAATTTTCCATGAAAGGCTGGGAAAGGTAGTTTCTACTCTGAGATTGATTAGTCAGTGTAATGGGCATCCTTCAGATCATTTTCTTTTCCCCGCAGTATTCTCATTTATTGCAATGGCTGACGGTCATGAAACTGATAAGAATATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCTAGAGGAAATGGGACTAGTATGATATCTCTCATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAGAGCAGGGTGAATCGCCAATCTGTTTTGGGTGCTATCACATCTGCTCAGCAGAGACTCAAGCTGTATAGCAAAGTTCCTCCGAATGGGCTTGTGCTTTACACTGGAACTATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACTATTGATTTTGAACCTTTCAGACCTATAAATGCATCTCTGTATCTCTGTGACAATAAGTTCCATACGGAAGCCCTGAATGAACTTTTAGAATCTGATGACAAGTTTGGTTTCATTGTCATGGATGGTAATGGAACACTCTTTGGTACATTGAGTGGTAACACACGTGAGGTTCTTCACAAATTTAGTGTTGACCTTCCTAAGAAACATGGAAGAGGAGGTCAATCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTCAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCTAATGTTGCAGGATTGATACTGGCTGGATCAGCCGACTTCAAAACAGAGCTCAGTCAATCAGACATGTTTGATCCTCGTCTTCAAACAAAAATACTTAATGTAGTTGATGTGTCTTATGGAGGAGAAAATGGATTTAATCAGGCCATTGAACTGTCCTCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACGGGGAAATATGTTTTTGGTGTTGATGACACACTGAAAGCTCTGGAGATGGGCGCTGTTGAGATACTCATTGTTTGGGAAAATTTGGATATCAACAGGTATGTTTTAAAGAATGCTTCCACTGGTGAGATAGTTATAAAGCACTTGAATAAGGAACAGGAGACCAATCAGAGCAACTTCCGTGACTCCGTCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGGTGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAACAGTTTGGTTGCACACTTGAGTTCGTCACCAACAAATCACAGGAAGGATCACAGTTTTGCAGGGGGTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATGAGATCGTTTGATGAGCTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG 2559 42.05 MERCLVAGFCLWFTLAFVIADENKSSVGSLIWSSAKEEGDLLIQYRPEEDSTAAAPVAHDADGFDGGFSSLDSMLQWAIGHSNPEKLKETAQDVKQLSPSELKKRQEEIKDLMEKLKMPSDAKLMQIALDDLKNSSLSLEDRYRALQELLILVEPIDNANDLGKLGGLAVLIHELNHIDPEVRKVAAWILGKASQNNPIVQKQVLELGALSKLVRMAKSDFVEEAIKAFYAISSLVRNNLSGQELFYAAAGETMLQDILRNSSMDIRLQKKAVFLVSDLAETQLEKADEAERSFFGDRFFLKSVVDLTHSKDIDLQEKALIAIKNLLLLRTTKAQVLREFCGLDIALERMRVKLEVLMEEEDHRDYAMDVESLRNQVELIFHERLGKVVSTLRLISQCNGHPSDHFLFPAVFSFIAMADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYSKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQTKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNASTGEIVIKHLNKEQETNQSNFRDSVTSAELEVQEKVALLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDGEEYGDSE 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 164623 170949 + CmaCh08G000300.1 Cma08g00030 298725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00030 852 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 422 556 IPR024049 -
Cma08g00030 852 Pfam eRF1 domain 2 560 693 IPR005141 -
Cma08g00030 852 Gene3D eRF1 domain 2 552 693 IPR042226 -
Cma08g00030 852 Gene3D - 695 852 IPR029064 -
Cma08g00030 852 SMART eRF1_1_2 420 556 IPR005140 -
Cma08g00030 852 SUPERFAMILY L30e-like 694 836 IPR029064 -
Cma08g00030 852 SUPERFAMILY ARM repeat 111 341 IPR016024 -
Cma08g00030 852 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 428 833 IPR004403 GO:0003747|GO:0006415
Cma08g00030 852 Pfam eRF1 domain 1 434 554 IPR005140 -
Cma08g00030 852 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 417 852 - -
Cma08g00030 852 Gene3D eRF1 domain 1 414 551 IPR024049 -
Cma08g00030 852 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 417 852 IPR004403 GO:0003747|GO:0006415
Cma08g00030 852 Pfam Nucleotide exchange factor Fes1 71 162 IPR013918 -
Cma08g00030 852 Pfam eRF1 domain 3 697 834 IPR005142 -
Cma08g00030 852 SUPERFAMILY Translational machinery components 558 692 - -
Cma08g00030 852 Coils Coil 129 149 - -
Cma08g00030 852 Gene3D - 103 384 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00417 Cma-Chr3:4483535 Cma08g00030 Cma-Chr8:164623 8.67E-19 dispersed
Cma07g01003 Cma-Chr7:5195339 Cma08g00030 Cma-Chr8:164623 9.95E-18 dispersed
Cma17g01392 Cma-Chr17:9263986 Cma08g00030 Cma-Chr8:164623 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00030 K03265 - csv:101218139 830.091