Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00051 ATGGCTTCTACTACCGGTCTTGTAGTTGGATCTTTTGTTTGGTTGGAGGATTCTGAAGAAGCTTGGATAGAGGGCGAAGTTTTAGAAATTCGTGGCGATGAAATTGAAGTCCTATGCACCTCGGGGAAGACGGTTGTAGTTAAAGCAGCCAATGTCTATCCCAAAGATTCCGAAGTGCCACCTTGCGGGGTGGATGACATGACCAAGTTGGCTTACTTACACGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAACGAAATATATACTTATACGGGGAACATATTGATTGCGGTGAACCCTTTTACAAAGTTACCTCATCTCTATGATAGCTATATGATGGCACAATATAAAGGGGCTGCATTCGGTGAGCTGAGTCCACATCCATTTGCAGTTGCAGATGCTGCCTACAGACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACGAAGTTGCTTATGCGTTATCTTGCGTATATGGGAGGGAGAGCTGCTACTGAAGGGAGGTCTGTTGAGCAGCAAGTTTTGGAGTCAAATCCTGTTCTAGAAGCATTTGGGAATGCAAAGACGGTTCGAAACAACAACTCAAGTCGATTCGGTAAGTTTGTGGAGATCCAATTTGACCAAAGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCACGTGTTTGTCAGGTGTCAGATCCAGAGAGAAATTATCATTGCTTCTACATGCTTTGTGCTGCGCCACCTGAGGAGGTCAAGAAGTATAAATTGGGAAACCCAAGAGATTTCCATTATCTAAATCAATCAAATTGCTATGAGTTGGATGGAATTGATGATGCCAAGGAATATATTGCTACGAGAAAAGCAATGGAAGTCGTTGGAATAAGTTTGGATGAGCAGGATGGAATTTTTCGTGTCGTGGCTGCAATTCTTCATCTTGGAAACATAGAATTTGCAAAAGGGAAGGAGGCTGATTCTTCTGTTCCCAAAGATGAAAAATCTTGGTTCCATCTTAGAACTGCTGCTGAGCTTTTCATGTGTGATGAAAAGGCCCTGGAAGATTCTCTCTGCAAACGTGTGATCGTCACTCGTGATGAAACTATCACAAAGTGGCTGGATCCAAATTCTGCAGCTCTTAGCCGAGATGCTCTGGCAAAAATTGTATACTCTAGGTTGTTTGACTGGCTGGTGGACAAAATTAATAATTCAATTGGTCAGGACCCTGATTCAAAGTTCTTGATTGGAGTGCTGGATATCTATGGATTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTACACTAAAGAGGAAATTGATTGGAGTTATATTGATTTTGTTGATAATCAAGATGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATCATTGCCCTTCTGGATGAAGCTTGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAGACATTCAAAAACCATAAACGCTTCAGCAAACCAAAATTAGCCCGGAGTGACTTCACAATTGCTCATTATGCTGGTGATGTCACCTATCAGACTGATTTATTTCTGGACAAAAATAAAGACTACGTTGTTGCTGAACATCAAGCGCTCTTGGGTGCCTCCAAATGCTCCTTTGTGTCGTGTTTGTTTCCTCCATTAGCTGAAGAATCATCCAAATCTTCGAAGTTCTCATCAATAGGCTCTCGTTTCAAGCTGCAATTGGTAGCACTTCTGGAAACTCTAAGTGCTACTGAGCCCCATTACATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTTCTATCTTCGAGAATAAAAATATATTACAACAATTACGTTGTGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTTTCCAACAAGGAAAACATTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCCGAAGTTTTGGATGGAAGTTCTGATGAAGTGGCTGCTTGCAAGAGGCTTCTAGAGAAGGTTGGACTTAAAGGATACCAGATCGGCAAGACAAAAGTCTTTCTTAGAGCTGGTCAGATGGCTGAACTTGATGCACTCAGGACTGAGATTTTAGGGAGATCTGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATTTGGCACGTAGAAGTTTTGTGTTGCTTCGGAGGTCAGCTACACATCTACAATCTGCATGTAGAGGACAACTTGCTCGACAAGTATTTGAGGGCATGAGGAGAGAAGCTTCTTCTATAATGATTCAAAGGAATTTGTGCATGCATATCTGCAGGAAAGCTTACAAAGAAAAGTACTCTTCAGCTGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCAATGAGCTACGCTTCAGAAGGCGGTCTAAAGCAGCAATTATTATTCAGAGCTACTGTCGTAGATATTTGGCTCAGCTGCACTATAAGAAGTTAAAGAAAGCAGCAATCACCACACAATCTGCATGGAGAGGAAGAGTTGCTCGTAAGGAACTACGGAAACTGAAGATGGCTGCAAAGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAATGTGGAGACTGCAGTTGGAGAAGCGCATGAGGGCTGATTTGGAAGAAGCTAAAACACAAGAAAACGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGCTTCAGTTGAAAGAAACAAGAACGATGTTCGAGAAGGAACGAGAAGCTGCAAAGAAGGCTGCTGATATTATTCCAATTGTGAAGGAGGTTCCAGTTATTGATAATGCGATAATCGAGAAAATTTCTGGTGAAAACGAAAAGCTCAAGGCGTTGGTATGTTCACTGGAAAAGAAAATTGGCGAAACAGAGAAAAAATATGAAGAGGCGAACAGAGTTAGTGAAGAACGGTTGAAGCAAGCATCAGAGGCCGAAACAAAAATTATTCAGTTAAAGACTGCAATGCAGAGGCTTGAACAAAAATTCTCAAATATTGAATCTCAAAATCAGATTCTTCGCCAGCAGACCTTCATGACAACACCAGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGTAGCAGAGAAATTGGAGAACGGTAGCCATTTGATTGAAGATAACAAAATCGATGAGCAGCTCGTAACACCCGTGAAAGCGCTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTCGACCTCTTTTCGAAAATCAACACGAGAATGTTGATGCTCTTGTCAGTTGTGTCATGAACAACATTGGGTTCAGTAATGGGAAGCCTGTAGCTGCCTTTACCATTTATAAATGTCTTCTTCACTGGAAATCTTTCGAAGCCGAAAAAACAAGTGTGTTTGATCGCCTAATTCAGATGATTGGATCTGCAATAGAGAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCGAACACATCTGGGCTACTGTTCTTGCTTCAAAGAAGCTTGAAAGCTGCCGGTGCTCCCCGAAAACCGCCAACTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTTCGTTCGTCTCCTTCTTCCAACAGTCTTGGATCTGCGCTTAAGGTCGTGCGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGTTGACAGCATATGTTGAAAAAATATTCGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACATCATTGCTTTCCTTGTGTATCCAAGTACCAAGAACATCAAAGGGAGTATTACGATCGGGAAGATCATTTGGAAAAGATACTCAAACAAATTACTGGCAAAGCATCATAGAATGCCTCAACATGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCGCAAATACTTACCCAGAATATCTTTGTTCAAAACTTTTCATACATTAATGTTCAACTCTTCAATAGCCTTCTTCTTCGTCGCGAATGTTGTACGTTCAGCAATGGGGAATATGTTAAATCCGGGTTAGCTGAGTTGGAGCTCTGGTGCTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCATATGATGAAATCACCAATGATCTTTGCCCGATTCTGAGTGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGATGACAACTATAACACTCGAAGCGTGTCGCCTGATGTAATATCCAGTATGAGAGTGCTCATGACTGAGGACTCCAACAGTGCAGTTAGCAGTTCCTTCCTATTGGATGACAATTCTAGCATCCCTTTCTCGGTCGAAGACCTCTCGAACTCACTGCAAGAGAAAGATTTCTGCGGCGTGAAGCCTGCCGACGACTTGCTTGAGAACCCAGCCTTCCAATTTTTAAACGACTCAGCTCGGAAATCTTGTTTTTGTACCATCCTCCCACAAAGAAAGGTCCCTCTCCTTGATGAAATTTTATTTATTCATTCAATCTGGGTTTGGTAG 4620 41.36 MASTTGLVVGSFVWLEDSEEAWIEGEVLEIRGDEIEVLCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTKLPHLYDSYMMAQYKGAAFGELSPHPFAVADAAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPRDFHYLNQSNCYELDGIDDAKEYIATRKAMEVVGISLDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLGASKCSFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVALLETLSATEPHYIRCVKPNNLLKPSIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVAACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVLLRRSATHLQSACRGQLARQVFEGMRREASSIMIQRNLCMHICRKAYKEKYSSAVSIQTGMRGMAARNELRFRRRSKAAIIIQSYCRRYLAQLHYKKLKKAAITTQSAWRGRVARKELRKLKMAAKETGALQAAKNKLEKQVEELMWRLQLEKRMRADLEEAKTQENEKLQSALQDMQLQLKETRTMFEKEREAAKKAADIIPIVKEVPVIDNAIIEKISGENEKLKALVCSLEKKIGETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEQKFSNIESQNQILRQQTFMTTPVKKMADHLPIAVAEKLENGSHLIEDNKIDEQLVTPVKALKRISSESEIKLSRPLFENQHENVDALVSCVMNNIGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSGLLFLLQRSLKAAGAPRKPPTSTSLFGRMTMGFRSSPSSNSLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSLCIQVPRTSKGVLRSGRSFGKDTQTNYWQSIIECLNMLLCTLKENFVPQILTQNIFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNSAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFCGVKPADDLLENPAFQFLNDSARKSCFCTILPQRKVPLLDEILFIHSIWVW 1539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 276033 287599 + CmaCh08G000510.1 Cma08g00051 298746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00051 1539 ProSiteProfiles IQ motif profile. 737 764 IPR000048 GO:0005515
Cma08g00051 1539 CDD MYSc_Myo11 76 720 IPR036018 -
Cma08g00051 1539 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cma08g00051 1539 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Cma08g00051 1539 Coils Coil 997 1048 - -
Cma08g00051 1539 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cma08g00051 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
Cma08g00051 1539 ProSiteProfiles Dilute domain profile. 1159 1454 IPR002710 -
Cma08g00051 1539 Gene3D - 11 55 IPR008989 GO:0003774|GO:0005524|GO:0051015
Cma08g00051 1539 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Cma08g00051 1539 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Cma08g00051 1539 PANTHER MYOSIN 6 1506 - -
Cma08g00051 1539 Pfam Myosin N-terminal SH3-like domain 11 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 Pfam DIL domain 1330 1433 IPR002710 -
Cma08g00051 1539 SMART DIL_2 1329 1436 IPR002710 -
Cma08g00051 1539 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 CDD MyosinXI_CBD 1110 1477 IPR037975 GO:0007015
Cma08g00051 1539 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Cma08g00051 1539 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Cma08g00051 1539 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Cma08g00051 1539 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Cma08g00051 1539 Gene3D - 252 310 - -
Cma08g00051 1539 Gene3D - 439 623 - -
Cma08g00051 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
Cma08g00051 1539 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 Coils Coil 877 950 - -
Cma08g00051 1539 PANTHER MYOSIN-14 6 1506 - -
Cma08g00051 1539 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 ProSiteProfiles IQ motif profile. 831 860 IPR000048 GO:0005515
Cma08g00051 1539 Gene3D - 833 882 - -
Cma08g00051 1539 Gene3D - 785 832 - -
Cma08g00051 1539 Gene3D - 735 784 - -
Cma08g00051 1539 SMART iq_5 853 875 IPR000048 GO:0005515
Cma08g00051 1539 SMART iq_5 830 852 IPR000048 GO:0005515
Cma08g00051 1539 SMART iq_5 734 756 IPR000048 GO:0005515
Cma08g00051 1539 SMART iq_5 757 779 IPR000048 GO:0005515
Cma08g00051 1539 SMART iq_5 805 827 IPR000048 GO:0005515
Cma08g00051 1539 SMART iq_5 782 804 IPR000048 GO:0005515
Cma08g00051 1539 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00051 1539 Gene3D - 667 731 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00051 Cma17g01361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00051 Cma-Chr8:276033 Cma12g01141 Cma-Chr12:8982701 0 dispersed
Cma06g01282 Cma-Chr6:8516480 Cma08g00051 Cma-Chr8:276033 0 transposed
Cma13g00731 Cma-Chr13:6486327 Cma08g00051 Cma-Chr8:276033 6.95E-08 transposed
Cma17g01361 Cma-Chr17:9101620 Cma08g00051 Cma-Chr8:276033 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00051 K10357 - csv:101208630 2826.97