Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00063 ATGGCGGTTTTGAAGCTTTTTGCTCTCTGTATTTCATTCTTCTTGTTGAACAGAGCCCCTGTTCGAGGTGGTGATTCCTTGCATTTCCCTTCTTCTGATGTTCAGCTTCTTCTCGAAAAGATCAGAGCTTCACTTGAAGGTGATACTCAGAACTTGCTTTTGTCTTCATGGAATTACTCTTTGCCACTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTAATGGAACATCTCTGGTTTGCAGTGATTCTTCTTCTCCCCAGTGGTCTAATCTCACTCTCTTCAAAGACCCTTCTCTTCATCTTCTCTCCCTGCAACTTCCTTCTGCTAACCTCTCTGGTTCCTTGCCTAAGGAGATTGGTGAGTTCACCATGCTCCAAAGTCTCTATCTCAACATAAACTCTTTGACTGGACCCATTCCACTCGAACTTGGTTATAGCTCCTCTCTTTCTGACATTGATTTGAGTAGCAATCTGTTGAGTGGAGCTTTTCCACCCTCGATCTGGAATCTGTGTGATAAACTTGTTTCTGTCAGGCTTGATGGAAATTCATTATCTGGGTCTCTGCCTGAGCCGGCTTTACCAGATTCCACCTGCAAGAGGTTGGAGGCTTTGGATTTTGGCAACAACCAGATTTCAGGTACTTTCCCAGAATTCATTACTCGATTTCAGGGCTTGAAAGAGCTTGATCTTGGGAACAATTTGTTGTCTGGACCAATCCCTCAGAGCATAGGCCAGTTAGAGCTGGAGAAGTTGAACCTTTCAAATAACAACTTCAGTGGAATGTTGCCTGTGTTTAGTAATAACTCAAAGTTTGGTGTGGAGGCTTTTGAAGGGAACAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTGCAGGAGCTTCTCATTTGAGTTCAGGCGCCATTGCTGGTCTTGTTATCGGCTTGATGACTGGGACGGTTGTTTTAGCTTCATTGCTTATTGGTTATATGCAAAACAAGAAGAAGAAGATAACTGAGAGTGAAGATGAGATTGAGGAAGGAGAAGATGAAGAAAATGGTGGTGGCGGTACCGGCGGGGGCACAGGTGGTGAAGGAAAGCTCATTTTGTTTCCGGGTGGTGAGCATTTGACATTGGATGATGTCTTGAATGCTACAGGGCAGGTTATGGAGAAAACGAGCTATGGCACGATATATAAAGCAAAGCTTGCTGATGGAGGTACCATTGCTCTGAGACTCCTGAGGGAAGGTAGTTGCAAAGACAGAAACACTTGCTCGTCTGTGATTAAACAATTGGGAAAGATTCGCCATGAGAATTTGATTCCTTTGAGAGCGTTCTATCAGGGAAAGAGAGGAGAAAAGCTGCTCATTTATGACTATCTGCCCATCAGAACTTTACATGATTTTCTTCATGAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCGTTAGGCGTCGCCCGGGGAATAGCTCATCTTCACACCGGTCTTGAAGTCCCCATTACACATGGTAATGTGAGATCAAAAAATGTACTTGTCGACGACTTCTTTACAGTGAGACTGACAGAGTTCGGGCTCGACAAGCTAATGATTCCATCGGTAGCTGACGAGATTGTATCGCTTGCAAAGTCGGACGGGTACAAGGCACCAGAGCTGCAAAGGATGAAGAAATGCAATTCAAGAACAGATGTGTATGCATTTGGGATCTTGCTGTTAGAGATTCTGATTGGGAAGAAGCCAGGGAAGAGTGGAAGAAGTGGAGAGTTTGTGGATCTGCCGTCAATGGTAAAAGTGGCAGTTCTGGAGGAGACAACAATGGAGGTTTTTGATGTGGAGGTTTTGAAAGGGATTAGAAGTCCCATGGAAGATGGAGTGGTTCAGGCGTTGAAGCTCGCAATGGGCTGCTGCGCACCAGTGGCTTCTGTGAGACCCTCCATGGATGAAGTTGTGAAGCAGCTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGCCCAACAGAAACAAGAAGTGAAATTGGTACCCCTTTTTGA 2037 45.26 MAVLKLFALCISFFLLNRAPVRGGDSLHFPSSDVQLLLEKIRASLEGDTQNLLLSSWNYSLPLCQWRGLKWVFSNGTSLVCSDSSSPQWSNLTLFKDPSLHLLSLQLPSANLSGSLPKEIGEFTMLQSLYLNINSLTGPIPLELGYSSSLSDIDLSSNLLSGAFPPSIWNLCDKLVSVRLDGNSLSGSLPEPALPDSTCKRLEALDFGNNQISGTFPEFITRFQGLKELDLGNNLLSGPIPQSIGQLELEKLNLSNNNFSGMLPVFSNNSKFGVEAFEGNSPGLCGEPLKSCAGASHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKITESEDEIEEGEDEENGGGGTGGGTGGEGKLILFPGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNTCSSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGVARGIAHLHTGLEVPITHGNVRSKNVLVDDFFTVRLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRSGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGVVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 361202 363538 + CmaCh08G000630.1 Cma08g00063 298758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00063 678 SUPERFAMILY L domain-like 51 266 - -
Cma08g00063 678 MobiDBLite consensus disorder prediction 658 678 - -
Cma08g00063 678 Gene3D Ribonuclease Inhibitor 32 196 IPR032675 -
Cma08g00063 678 Gene3D Phosphorylase Kinase; domain 1 368 454 - -
Cma08g00063 678 SUPERFAMILY Protein kinase-like (PK-like) 383 654 IPR011009 -
Cma08g00063 678 Gene3D Ribonuclease Inhibitor 199 296 IPR032675 -
Cma08g00063 678 Pfam Protein tyrosine and serine/threonine kinase 382 653 IPR001245 GO:0004672|GO:0006468
Cma08g00063 678 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 6 678 - -
Cma08g00063 678 MobiDBLite consensus disorder prediction 333 355 - -
Cma08g00063 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 6 678 - -
Cma08g00063 678 Coils Coil 325 345 - -
Cma08g00063 678 MobiDBLite consensus disorder prediction 659 678 - -
Cma08g00063 678 Gene3D Transferase(Phosphotransferase) domain 1 456 671 - -
Cma08g00063 678 Pfam Leucine rich repeat 201 259 IPR001611 GO:0005515
Cma08g00063 678 ProSiteProfiles Protein kinase domain profile. 378 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00063 Cma-Chr8:361202 Cma04g00125 Cma-Chr4:592508 1.76E-15 dispersed
Cma17g01238 Cma-Chr17:8497906 Cma08g00063 Cma-Chr8:361202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68736 PF07714 PK_Tyr_Ser-Thr 1.60E-25 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00063 - - cmo:103497530 1146.34