Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00078 ATGGCCTCCGCCGCCATCGGAACTTCACGCCCTTTCACTGTCTTGCTCTTTGTGATCATCAACTTACTTTCCAGCACCATCCTCGGCGGAGGCGGCGGCGTCGCCGTCGGCGTCTATGCTGATAATGGCGTGTTCAGCGTCAAATACAAGTATGCCGGACGGGAACGTTCTCTTAGTACTCTTAAGGCGCACGACATCAACCGTCAGCTTCGATTTCTTGCCGGCGTCGATATTCCCCTCGGTGGCTCTGGCCGGCCTGATGCCGTCGGACTTTACTATGCCAAAATTGGAATCGGGACTCCTCCCAAGAACTATTATGTTCAAGTGGATACAGGGAGTGACATTGTGTGGGTGAATTGTATTCAGTGTAAGGAGTGTCCGAGGAGAAGCTCTCTGGGGATGGAACTCACTACGTATGATTTGGAGCAATCCACTACTGGAAAATTGGTTTCTTGTGATGAACAATTTTGCTTGGAGGTGAATGGGGGTCCACTCTCAGGCTGCACTGCTAATATGTCCTGTCCATATCTTCAGATATATGGTGATGGGAGCTCGACTGCTGGAATCTTTGTCAAGGACTATGTTCAATATGATCGGGTTTCTGGAGACCTTGAGACTACAGCTGCTAATGGAAGTATCAAGTTTGGATGTGGTGCTAGACAATCTGGGGATTTAGGTTCGTCCGGTGAAGAAGCACTTGATGGGATACTTGGTTTCGGAAAATCAAATTCATCTATTATTTCACAACTAGCCTCTTCAAGAAAAGTGAAGAAGATGTTTGCTCATTGCCTAGACGGAATAAATGGGGGTGGTATCTTTGCGATGGGACATGTTGTGCAGCCAAAAGTTATCATGACTCCGTTGGTACCAAATCAGCCACATTACAATGTTAATATGACGGGAGTACAAGTTGGTCGTGTCATGTTAAATATTTCTGCTGATGTATTTGAGGCGGGAGACAGAAAAGGGACGATCATTGATAGTGGCACAACTTTGGCATATCTTCCAGAATTGATTTACGAGCCATTAGTGACCATGATACTCTCACGGCAACACAATTTGGAAGTTCAATCCATTCATGGAGAATATAAATGTTTTCAGTACTCAAGAAGTGTCGATGATGGATTTCCTCCAGTTACTTTCCATTTCGAGAATTCACTCTTGTTGAAGGTTTATCCTCATGAATATCTATTCCAACATGAGGGCTTGTGGTGTATTGGTTGGCAAAACAGTGGGATGCAATCTAGGGATAGGAAGAACGTTACCCTCTTTGGAGATTTAGTGCTTTCAAATAAGCTAGTTTTATACGATCTCGAGAACCAGACAATCGGGTGGACCGAATACAACTGTTCTTCAAGCATCAAAGTGCAAGATGAACAAACCGGAACAATTGAATACCAAATGGGCTGTGATCTTGCTATTCCTAATCTTGGTGATGCACTGGTCAGCTCATTTCAGATGCCTCAGCTAACACAAAATCCCAACAGCAGGCCCTACAGGGCCCTCGGGATGGGATCATGTCTCTCTGGGGAGCGCAAGAACCGAAAGATCGTTTATTCTGAGATCGCTTCCACTTCTCATAATGATGCCGTTTGTACCCGAAAGAGCTCCAAGATGAAGATTACGAGAAGAGGTTGTCCCGCTGATGACGCTACAAGGGAGATGTCGCTTCATCGAGTTCCTGGCCGGATGTTTTTGAATGGATCAACTGATAATGCGACGCTCTTTACTAGGCAAGGCAAGAAAGGCGTTAATCAGGACGCTATGATTGTCTGGGAGAATTTTGGTTCAAAAGAAGATGCAACCTTTTGCGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTGAGTGCTCAGTGGGAATTGGACGCTACCAGAGAGAATGGGCAAACTGAGGCGAGATGTCGAGTCTCTCCACCAACGCTGATTAACAAGGACTCTGAAATCTCTCATTGTGATCTTGCTCGTCAGGACGGTTACAATGACATGTATGTCAACTTGAAAGAATCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCTCATATTGATTGCTTTACCAGTGGTACAACATCAGTTGCTTTGGTCAAACAGGGTCGGGATCTTATCATCGGAAATGTTGGGGACTCGAGGGCTGTATTAGGTACCAGAGATAAATCTAACTCCCTCATTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAGTGAGCCTCAGATTTTTCGGGTTTGGCTTCCCAACAGTGATTGTCCTGGTCTTGCTATGGCCAGAGCCTTTGGAGATTTCTGTTTAAAAGACTTTGGCTTGATAGCCGTTCCTGACGTTTCTTATTATCATCTTACTGAGAAAGATGAATTTGTGGTACTGGCTACAGATGGGGTTTGGGATGTTCTCTCAAATGAAGAGGTTGTGGCAACTGTTGCATCTGTTCCAAGATCCTCTGCAGCTCGTAACCTTGTGGATTCAGCTACTCGAGCATGGAGATGTAAGTACCCTGCTGCCAAGGTGGATGATTGTGCTGTAGTCTGCCTGTTCCTGAACTCTAGTGAGACCGCTACAGCGATACCTAAAGAGCAGGAGTTCACTGAGGAAATGGAAACGAAGCTCTCTTAA 2724 45.34 MASAAIGTSRPFTVLLFVIINLLSSTILGGGGGVAVGVYADNGVFSVKYKYAGRERSLSTLKAHDINRQLRFLAGVDIPLGGSGRPDAVGLYYAKIGIGTPPKNYYVQVDTGSDIVWVNCIQCKECPRRSSLGMELTTYDLEQSTTGKLVSCDEQFCLEVNGGPLSGCTANMSCPYLQIYGDGSSTAGIFVKDYVQYDRVSGDLETTAANGSIKFGCGARQSGDLGSSGEEALDGILGFGKSNSSIISQLASSRKVKKMFAHCLDGINGGGIFAMGHVVQPKVIMTPLVPNQPHYNVNMTGVQVGRVMLNISADVFEAGDRKGTIIDSGTTLAYLPELIYEPLVTMILSRQHNLEVQSIHGEYKCFQYSRSVDDGFPPVTFHFENSLLLKVYPHEYLFQHEGLWCIGWQNSGMQSRDRKNVTLFGDLVLSNKLVLYDLENQTIGWTEYNCSSSIKVQDEQTGTIEYQMGCDLAIPNLGDALVSSFQMPQLTQNPNSRPYRALGMGSCLSGERKNRKIVYSEIASTSHNDAVCTRKSSKMKITRRGCPADDATREMSLHRVPGRMFLNGSTDNATLFTRQGKKGVNQDAMIVWENFGSKEDATFCGVFDGHGPFGHMVAKKVRDSLPLKLSAQWELDATRENGQTEARCRVSPPTLINKDSEISHCDLARQDGYNDMYVNLKESFLKAFKVMDKELKLHPHIDCFTSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDKSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQSEPQIFRVWLPNSDCPGLAMARAFGDFCLKDFGLIAVPDVSYYHLTEKDEFVVLATDGVWDVLSNEEVVATVASVPRSSAARNLVDSATRAWRCKYPAAKVDDCAVVCLFLNSSETATAIPKEQEFTEEMETKLS 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 406155 419423 + CmaCh08G000780.1 Cma08g00078 298773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00078 907 SMART PP2C_4 561 881 IPR001932 -
Cma08g00078 907 ProSiteProfiles PPM-type phosphatase domain profile. 572 883 IPR001932 -
Cma08g00078 907 SUPERFAMILY PP2C-like 573 884 IPR036457 -
Cma08g00078 907 PRINTS Pepsin (A1) aspartic protease family signature 324 335 IPR001461 GO:0004190|GO:0006508
Cma08g00078 907 PRINTS Pepsin (A1) aspartic protease family signature 422 437 IPR001461 GO:0004190|GO:0006508
Cma08g00078 907 PRINTS Pepsin (A1) aspartic protease family signature 98 118 IPR001461 GO:0004190|GO:0006508
Cma08g00078 907 Pfam Xylanase inhibitor C-terminal 294 446 IPR032799 -
Cma08g00078 907 SUPERFAMILY Acid proteases 87 454 IPR021109 -
Cma08g00078 907 CDD PP2Cc 578 883 IPR001932 -
Cma08g00078 907 Gene3D - 567 886 IPR036457 -
Cma08g00078 907 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 468 - -
Cma08g00078 907 ProSiteProfiles Peptidase family A1 domain profile. 92 446 IPR033121 -
Cma08g00078 907 Gene3D Acid Proteases 83 277 IPR021109 -
Cma08g00078 907 Gene3D Acid Proteases 278 456 IPR021109 -
Cma08g00078 907 Pfam Protein phosphatase 2C 586 861 IPR001932 -
Cma08g00078 907 CDD pepsin_A_like_plant 92 450 IPR034161 -
Cma08g00078 907 Pfam Xylanase inhibitor N-terminal 92 276 IPR032861 -
Cma08g00078 907 PANTHER ASPARTYL PROTEASES 13 468 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00483 Cma-Chr1:2450184 Cma08g00078 Cma-Chr8:406155 2.75E-160 dispersed
Cma06g00425 Cma-Chr6:1954931 Cma08g00078 Cma-Chr8:406155 2.12E-99 dispersed
Cma07g00884 Cma-Chr7:4171047 Cma08g00078 Cma-Chr8:406155 4.99E-80 dispersed
Cma08g00078 Cma-Chr8:406155 Cma10g00849 Cma-Chr10:4088708 3.98E-159 dispersed
Cma20g00538 Cma-Chr20:2593032 Cma08g00078 Cma-Chr8:406155 3.10E-90 dispersed
Cma20g00555 Cma-Chr20:2692702 Cma08g00078 Cma-Chr8:406155 4.17E-127 dispersed
Cma17g00593 Cma-Chr17:4918065 Cma08g00078 Cma-Chr8:406155 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00078 - - cmax:111498125 924.08