Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00110 | ATGGAGTTGGATGGCTTCGAACGCGCGCCGCCGTCCATGGACGTGATGGACGAGGAGGACAAGACCCTTCAATGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGGATCAGCAATAACGACAACCCGACCACTACAAGTGTCCACGAGCTGCTCGAATGTCCTGTCTGCACTAATTCTATGTATCCTCCAATTCATCAGTGTCCTAATGGACATACCCTCTGTTCTTCGTGTAAAACGAAGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATTAGATGTCTAGCATTAGAAAAGATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCTCGGAGATATTGCCTTACTATAGTAAACTAAAACATGAATCTGCCTGTTACTTCAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAGTTGATGGGGAGATTCCTTTCCTTGTTTCTCATCTTCGAGATGATCACAAAGTCGATATGCATTCCGGATGCACGTTTAATCATCGTTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTATATGGATGTTAACTGTCTTCCACTGTTTTGACCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTTGGTATGGCACCAGTTTACATGGTGTTTCTCCGATTCATGGGCGATGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGATCGGTGGGAATGGCAGGAAGCTAACATGGGAAGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCCGAGACAGCCACGATGGCCTCATTATACATCGAAACATGGCACTGTTCTTCTCGGGCGGGGAAAGGAAAGAGCTGAAGTTGCGGATCATGGGACGGATTTGGAAAGAACAAAATAAACAGTGA | 918 | 46.62 | MELDGFERAPPSMDVMDEEDKTLQCHCQFPSISKPRISNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTKVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCSEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGEIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENAIWMLTVFHCFDQYFCLHFEAFQLGMAPVYMVFLRFMGDETDARNYSYSLEIGGNGRKLTWEGNPRSIRDNHKKVRDSHDGLIIHRNMALFFSGGERKELKLRIMGRIWKEQNKQ | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 583263 | 585687 | + | CmaCh08G001100.1 | Cma08g00110 | 298805 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00110 | 305 | CDD | RING-HC_SIAHs | 52 | 90 | - | - | |
Cma08g00110 | 305 | Pfam | Seven in absentia protein family | 96 | 294 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cma08g00110 | 305 | SUPERFAMILY | RING/U-box | 48 | 94 | - | - | |
Cma08g00110 | 305 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 295 | IPR008974 | GO:0005515 | |
Cma08g00110 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 54 | 90 | IPR001841 | - | |
Cma08g00110 | 305 | CDD | Sina | 168 | 296 | - | - | |
Cma08g00110 | 305 | Coils | Coil | 303 | 305 | - | - | |
Cma08g00110 | 305 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 12 | 303 | - | - | |
Cma08g00110 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 97 | IPR013083 | - | |
Cma08g00110 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 107 | 167 | IPR013010 | GO:0008270 | |
Cma08g00110 | 305 | SUPERFAMILY | TRAF domain-like | 107 | 298 | - | - | |
Cma08g00110 | 305 | PANTHER | UBIQUITIN LIGASE SINAT3 | 12 | 303 | - | - | |
Cma08g00110 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 162 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02300 | Cma-Chr4:16037764 | Cma08g00110 | Cma-Chr8:583263 | 4.62E-23 | dispersed | |
Cma08g00110 | Cma-Chr8:583263 | Cma18g01332 | Cma-Chr18:10151205 | 3.21E-154 | dispersed | |
Cma17g00559 | Cma-Chr17:4545506 | Cma08g00110 | Cma-Chr8:583263 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00110 | K04506 | - | csv:101209363 | 615.15 |