Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00110 ATGGAGTTGGATGGCTTCGAACGCGCGCCGCCGTCCATGGACGTGATGGACGAGGAGGACAAGACCCTTCAATGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGGATCAGCAATAACGACAACCCGACCACTACAAGTGTCCACGAGCTGCTCGAATGTCCTGTCTGCACTAATTCTATGTATCCTCCAATTCATCAGTGTCCTAATGGACATACCCTCTGTTCTTCGTGTAAAACGAAGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATTAGATGTCTAGCATTAGAAAAGATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCTCGGAGATATTGCCTTACTATAGTAAACTAAAACATGAATCTGCCTGTTACTTCAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAGTTGATGGGGAGATTCCTTTCCTTGTTTCTCATCTTCGAGATGATCACAAAGTCGATATGCATTCCGGATGCACGTTTAATCATCGTTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTATATGGATGTTAACTGTCTTCCACTGTTTTGACCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTTGGTATGGCACCAGTTTACATGGTGTTTCTCCGATTCATGGGCGATGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGATCGGTGGGAATGGCAGGAAGCTAACATGGGAAGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCCGAGACAGCCACGATGGCCTCATTATACATCGAAACATGGCACTGTTCTTCTCGGGCGGGGAAAGGAAAGAGCTGAAGTTGCGGATCATGGGACGGATTTGGAAAGAACAAAATAAACAGTGA 918 46.62 MELDGFERAPPSMDVMDEEDKTLQCHCQFPSISKPRISNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTKVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCSEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGEIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENAIWMLTVFHCFDQYFCLHFEAFQLGMAPVYMVFLRFMGDETDARNYSYSLEIGGNGRKLTWEGNPRSIRDNHKKVRDSHDGLIIHRNMALFFSGGERKELKLRIMGRIWKEQNKQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 583263 585687 + CmaCh08G001100.1 Cma08g00110 298805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00110 305 CDD RING-HC_SIAHs 52 90 - -
Cma08g00110 305 Pfam Seven in absentia protein family 96 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma08g00110 305 SUPERFAMILY RING/U-box 48 94 - -
Cma08g00110 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 295 IPR008974 GO:0005515
Cma08g00110 305 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Cma08g00110 305 CDD Sina 168 296 - -
Cma08g00110 305 Coils Coil 303 305 - -
Cma08g00110 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 12 303 - -
Cma08g00110 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 97 IPR013083 -
Cma08g00110 305 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Cma08g00110 305 SUPERFAMILY TRAF domain-like 107 298 - -
Cma08g00110 305 PANTHER UBIQUITIN LIGASE SINAT3 12 303 - -
Cma08g00110 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 162 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02300 Cma-Chr4:16037764 Cma08g00110 Cma-Chr8:583263 4.62E-23 dispersed
Cma08g00110 Cma-Chr8:583263 Cma18g01332 Cma-Chr18:10151205 3.21E-154 dispersed
Cma17g00559 Cma-Chr17:4545506 Cma08g00110 Cma-Chr8:583263 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00110 K04506 - csv:101209363 615.15