Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00114 ATGACGCTTTCAGAGCAGAATCCGGCGGAGTTTCATAAAGGTTTGGAAGGTGAGGGTCTGTTTGAGGAGCTATGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTTTCAATGGAGAAAGGGTTTTTTACTTCCCTCAAGGGCATATGGAACAACTGGAAGAGTCAACAAATCATGAACTCAATCACCAAATCCCTCATTTTGATCTTCCTTCTAAGATCCTCTGTCGTGTCGTGAACATTCGTTTGTTGGCTGAAAAGGAAACGGATGAGGTCTATGCTCAAATCACTTTACAACCAGAAGCTGATCAAAGTGAGCCGCAATGCCCTGATCCAGAGCCGCCTGAGCGGACAAGGCCAACTGTTCATTCTTTTTGTAAGATTTTGACAGCTTCTGATACTAGCACTCATGGAGGTTTCTCTGTTCTTAAAAAACATGCCACTGAATGCCTTCCTCCCCTTGACATGAGTCAGTCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGACATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGGAGGCATTTGCTAACAACAGGGTGGAGTACGTTCGTCGTATCGAAACGACTCGTTGCTGGGGATGCCTTTGTGTTCTTAAGGGGTGACAATGGGGAACTAAGAGTCGGGGTTCGACGACAGGCTCGACAGCAGAGTTTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCTGTTCGTACGCAGACGTTTTTTGTTGTGTATTACAAGCCGAGAACTAGCCAATTCATCATCGGCTTAAACAAATACTTGGAAACGATCAAGAACGGATATGAAGTCGGGATGCGGTTTAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGTACTATTGTTGGTGTTGGAGACATATCCCCAATTTGGTCTGATTCTAACTGGCGATCACTGAAGATTCAATGGGATGAAGCTGCTGCAATCCAGAGGCCCGAGCGAGTTTCTCCGTGGGAAATTGAACCATTTGCACCGTCTGCGTCCTTAAACTTCACTCATCCATCCATAAAGAGTAAGAGGGCTCGACCCGTCGAGGTTCCTCCTCCTGAAAACACTTCTAGCTCGACTCCTACGGGTTTTTGGCTTCACGGATCGACGATTCCTCACGAGATACCCCAACTAAGTGGTGCTAATGATGTTCCGAGCAGCGGTAACCAGGTTGTTTGGTCTCTCTGGCAGCAAACGCTCGATGTCAATGTCGATAGCTGTCGAAGCCACTGCAATCCAATGGCACATGTTGAAGGCATTTGGCCTTCTCCTCCTCCTCCACTCTGTAATAACTCCCTGAACCCTCTTCCCTCCCCTTATTCTCCATCTAGTACTTCAAAGCCTAGCAGTGAGCTCAATGAGCACGATCAATCGGAGAAAGGGAATAAACCCGACATCTCTCTCGGCTGCCGAATATTCGGGATCGATTTGAAAACGAACTCTAGCATTGTCCCTTCCTTGGAGAAGAAATCGTGTTGCCAAACTACGGTGGCCACCGACAGTGCCAAGGATCCAGTACCGACAGCTGCTGTGACATCTCAAGCCGATGCAGGAAAGGAGCAGCAGCAAGTTGCATCAGAGCTGTCGATGAAAGGAACACAGACGATTCACATTCCGAATTCATCGTCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTCGGTCGAGCAGTTGACTTAACGACACTAAAAGGGTACGAAGATCTCATAGACGAACTTGAGAACGTGTTCGAAATAAAAGGAGAACTTCGCGAAATGAACAAGTGGTCTGTCGTTTTCACAGACGATGAATACGACATGATGCTCGTGGGGGATGATCCATGGCCAGAATTCTGCAAGATGGTGAAGAGGATCTTTATATACTCGAGCGAAGAAGTTAAGACGATGAGTAGCAACAGCAAGCTCGTTTCGCCACCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACAGAATCCTAA 2043 47.14 MTLSEQNPAEFHKGLEGEGLFEELWKACAGPLVEVPFNGERVFYFPQGHMEQLEESTNHELNHQIPHFDLPSKILCRVVNIRLLAEKETDEVYAQITLQPEADQSEPQCPDPEPPERTRPTVHSFCKILTASDTSTHGGFSVLKKHATECLPPLDMSQSTPTQELAAKDLHGHEWKFKHIFRGQPRRHLLTTGWSTFVVSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTFFVVYYKPRTSQFIIGLNKYLETIKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPIWSDSNWRSLKIQWDEAAAIQRPERVSPWEIEPFAPSASLNFTHPSIKSKRARPVEVPPPENTSSSTPTGFWLHGSTIPHEIPQLSGANDVPSSGNQVVWSLWQQTLDVNVDSCRSHCNPMAHVEGIWPSPPPPLCNNSLNPLPSPYSPSSTSKPSSELNEHDQSEKGNKPDISLGCRIFGIDLKTNSSIVPSLEKKSCCQTTVATDSAKDPVPTAAVTSQADAGKEQQQVASELSMKGTQTIHIPNSSSRTRTKVQMQGVAVGRAVDLTTLKGYEDLIDELENVFEIKGELREMNKWSVVFTDDEYDMMLVGDDPWPEFCKMVKRIFIYSSEEVKTMSSNSKLVSPPSLDSLDSERKTES 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 601684 605007 + CmaCh08G001140.1 Cma08g00114 298809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00114 680 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma08g00114 680 MobiDBLite consensus disorder prediction 98 120 - -
Cma08g00114 680 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Cma08g00114 680 MobiDBLite consensus disorder prediction 460 477 - -
Cma08g00114 680 MobiDBLite consensus disorder prediction 458 491 - -
Cma08g00114 680 ProSiteProfiles PB1 domain profile. 570 651 IPR000270 GO:0005515
Cma08g00114 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma08g00114 680 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Cma08g00114 680 PANTHER AUXIN RESPONSE FACTOR 11 8 668 - -
Cma08g00114 680 CDD B3_DNA 123 225 IPR003340 GO:0003677
Cma08g00114 680 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Cma08g00114 680 Gene3D - 122 227 IPR015300 -
Cma08g00114 680 Pfam AUX/IAA family 557 655 IPR033389 -
Cma08g00114 680 SMART B3_2 125 227 IPR003340 GO:0003677
Cma08g00114 680 MobiDBLite consensus disorder prediction 369 388 - -
Cma08g00114 680 Gene3D - 287 358 - -
Cma08g00114 680 MobiDBLite consensus disorder prediction 657 680 - -
Cma08g00114 680 Gene3D - 566 658 - -
Cma08g00114 680 SUPERFAMILY CAD & PB1 domains 566 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00003 Cma-Chr6:6741 Cma08g00114 Cma-Chr8:601684 0 dispersed
Cma08g00114 Cma-Chr8:601684 Cma15g01291 Cma-Chr15:8184046 0 dispersed
Cma08g00114 Cma-Chr8:601684 Cma02g00922 Cma-Chr2:5485375 0 transposed
Cma08g00114 Cma-Chr8:601684 Cma16g00533 Cma-Chr16:2722122 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35462 PF02362 B3 1.10E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00114 K14486 - csv:101205805 1066.6