Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00169 ATGAAGGGGGCTGCGATGGCACGAGCGGAAGAAGAAGAAGTGGCGCGGAAGAAGCGACGGCGCGACGAAAAAGAAGAAGTGGCGCGCGATTCTTCGTCGTCCACCGACCACAATCCGCCGCGACTTCATTTGCTGAGCTTCGATTTTCAAGAACGTTCTGATGCTCGGCCACCACTGCGTCGAGTAACCACCGCATCACCACTCTCACTCACACATCGTTGCCACTGCGATGGCGATTCCTTTCGGGAAGATCACCATTCTCGTTGGAGCTGGTTCATACACTGTATTGTTGGCTCTGTTCTGGCAAAAGAAGGACGCTTGCCATATGTATCCGATTTTGTATCAGGTGCTTTTAAGATTGCTCTAAAGCGTATCAGTCGAGATGATTCCAGCAGTCCAAAAAGCAAGCCACGAAATGAATCTTTAATGGCTCAGGTAAAAAGCTTACAGCAAGAACTGCAAATGTTAGCATCAAATCGTCAGATGACAATTGTGACTACTGGCGGGACAGGGGGTAGGAAATTTGGCGTAATCATTCTTGTAGTTGTAGTAGGATATGGGTTTGTTTGGATGAAGGGATGGAAACTTCCTGATATGATGTTTGCTACAAAGCGTAGTCTATCTGATGCTTGCAGTTCTGTTGCTAGACAGCTTGAAAATGTTTACTCATCCATCACGGCTACAAAACGGAATTTATCTTCAAAAATGGACAACATTGACAAAAGTTTGGATGAATCTTTGGATCTCACTGCCGGTACACAAGAACAGGTTTCGGAACTACGAGGTAAATCAGATACTTTTGGCAGGGATATTAAATCCGTTCATCATGCAGTCCAGACTTTGGAAAATAAACTATGGAGTTTTGAAGAAAAGCAGGAACAAACGACTGAAGGTGTTAGGAGATTGTGTAATTATGCTTGGAACATGGAGAATCAAAGGGCCGTGGAACGTACTCAGGCAATTCCTTCTAGTTCCAGTAGGCAAGCTCTTGAACTCCCTCCACCAACACCTTCACCAAAGCAAAATCGGTCGTTGCCGATTGGTTTTTCACCAGAGGCGCTGTCTCCCTCCGAGTTTAATTCTTCTTCTAACCAGGTTCAAGTTCATCGACGACCCCTCCAAAATACCGTCTCTGACCCCGGCTTGATGTTAGAAGGAACCAGAGATTCAAACGTGCAGTCGAGCAGCAGACTCGATACAACATCCAATGGAAGCAGTGTACCCAATGGGATCAGTACATCGGATTCCACCAGAAGCGAGGCTGGGAATTCCGGGCTATCAGGACTTGGATTTCTTACGAGAACGAGGAGTGCAGTGAGTGCAGTATTCCGGCAGTCTCGCCCAACTAATTCTAGCAGTGCCCAAACCCAGATGAAGAAGATATCGCATAGTTTCTGGTGGGTACAGAATTTTGTAGTTATGATTGTTATTAAGTTCTTTTGTTTTAGGACATTGGTTCGGTTATTTACTGTTCAAACCCGAAAACAATGGTCTGATCCGAGGAAATCTTCCACCGCCACCACTTCCTCGACCACTCTTCCACTCTATCGCTCCGCTCCTCCTCTCGAAGTCAGGCTTGAAGAATTCGAACTTTATGCCATAGATCGTCTTCGAGTTCTTAAAGGAATTTCTGATGGTTTATCTCGAGGAAAGAAATCTGAAGAAATGGAGAAACTGGTTAGAGGCTTGTTGAATGCCCATATGAAACATCCACAGGCATCCGAGGCTGTGAACAAGGATATAATATCTCACTTTGTTCTGCGCCTCGTATACTGCAGAACGGAGGACTTGAGAAAATGGTTTCTTTCTATGGAAACTATGCTCTTTCGACACCGTTTTCTTTCTGAAAGTCCTGAATCTCAGAAGCAGGTCTTTTCGGAGCTTGGCCTCTCATACAAAGCAATCAGTTATGCAGAGTTTGAGGCTGTGAAGGACAAATTGGTCCAAGTTGCTCGGTTGATTGGTCAGCCTGTACCAAGCGCTGATGCAATATACTATAAGGTACCATGGGAAGAAGTTCCAGAACTGGTGGCTGGTCGAAGGGTATTACTTCATAAAGGATATGCATATATTGCTATTTATCAGGTGGTTTCCCTTGTTGCAACACAATTCCGCAGTTACCTATCAAAGACCTTAAGTCTGACAAACAGGAAATGGACATCTACAATAAGAGAACAAGAGAAGGATCGGTTGACCCCTATCGTTGAAGCCCTTTGCACAAGCTACCTGGGTCCTGACTACTCACAGCCAACAGAGTATGCTGATATATCAATCAAAGACCTTGAACAAATTGCTAAAAGTTCATTTCCTCTTTGCATGCGGCACCTATTTGATAAGCTGAAAGAAGATCATCATTTGAAGCATGGAGGGAGAATGCAATTAGGTCTCTTTCTCAAGGGTGTTGGTTTGAAGCTTGATGATGCCCTTACTTTCTGGAGAGCTGAGTTCTCGCAGAGAGTTGGTGTTGAGAGGTTTGACAAAGAATATGCATACAGTATCAGGCATAACTATGGAAAAGAAGGCAAGAGAGTGGATTATTCACCTTATTCCTGTCAAAAAATTATCTCATCATCACCTGGTGTTGGAGATCATCATGGATGTCCCTATAGACATTTCAGTGAAGACAACTTAAGAGCAGCTCTAGGTAAAATGGGAGTAAATAACCAGAAAATAGAAGATATATTGGACAAAGTGCGAAATAGACATTATCAGTTGGCCTGCACCTTGACATTTGAATCGGTTCATGGTTCGTCGTGCGACGCTGGGATTAATCATCCAAACCAGTACTTCATTGATAGTCAAAAAGTTCTGCAATCTAAGAACAATTCAACAGCTTACGTGCTTAGCTATCCTTTTGTAGCACTGGAAAACGCTCTTGCAAGGCGAGTGGGTTCAAACCAGATCGAACTGAAGCGCCCATTATGTCGAAATCCGATTCCCTTCTGGTTTTTGAAGCCGTTTTTCAGCGTTCTGTTTCTTCAGTTCTTCCTCTTTGAGCTCTCTCAGATTGAAGTTGGAGCTTCACTTTGA 3030 44.13 MKGAAMARAEEEEVARKKRRRDEKEEVARDSSSSTDHNPPRLHLLSFDFQERSDARPPLRRVTTASPLSLTHRCHCDGDSFREDHHSRWSWFIHCIVGSVLAKEGRLPYVSDFVSGAFKIALKRISRDDSSSPKSKPRNESLMAQVKSLQQELQMLASNRQMTIVTTGGTGGRKFGVIILVVVVGYGFVWMKGWKLPDMMFATKRSLSDACSSVARQLENVYSSITATKRNLSSKMDNIDKSLDESLDLTAGTQEQVSELRGKSDTFGRDIKSVHHAVQTLENKLWSFEEKQEQTTEGVRRLCNYAWNMENQRAVERTQAIPSSSSRQALELPPPTPSPKQNRSLPIGFSPEALSPSEFNSSSNQVQVHRRPLQNTVSDPGLMLEGTRDSNVQSSSRLDTTSNGSSVPNGISTSDSTRSEAGNSGLSGLGFLTRTRSAVSAVFRQSRPTNSSSAQTQMKKISHSFWWVQNFVVMIVIKFFCFRTLVRLFTVQTRKQWSDPRKSSTATTSSTTLPLYRSAPPLEVRLEEFELYAIDRLRVLKGISDGLSRGKKSEEMEKLVRGLLNAHMKHPQASEAVNKDIISHFVLRLVYCRTEDLRKWFLSMETMLFRHRFLSESPESQKQVFSELGLSYKAISYAEFEAVKDKLVQVARLIGQPVPSADAIYYKVPWEEVPELVAGRRVLLHKGYAYIAIYQVVSLVATQFRSYLSKTLSLTNRKWTSTIREQEKDRLTPIVEALCTSYLGPDYSQPTEYADISIKDLEQIAKSSFPLCMRHLFDKLKEDHHLKHGGRMQLGLFLKGVGLKLDDALTFWRAEFSQRVGVERFDKEYAYSIRHNYGKEGKRVDYSPYSCQKIISSSPGVGDHHGCPYRHFSEDNLRAALGKMGVNNQKIEDILDKVRNRHYQLACTLTFESVHGSSCDAGINHPNQYFIDSQKVLQSKNNSTAYVLSYPFVALENALARRVGSNQIELKRPLCRNPIPFWFLKPFFSVLFLQFFLFELSQIEVGASL 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 923332 941959 + CmaCh08G001690.1 Cma08g00169 298864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00169 1009 Pfam Eukaryotic and archaeal DNA primase, large subunit 665 930 IPR007238 GO:0006269
Cma08g00169 1009 Gene3D - 478 738 - -
Cma08g00169 1009 MobiDBLite consensus disorder prediction 1 42 - -
Cma08g00169 1009 MobiDBLite consensus disorder prediction 387 428 - -
Cma08g00169 1009 CDD PriL_PriS_Eukaryotic 515 933 IPR016558 -
Cma08g00169 1009 MobiDBLite consensus disorder prediction 316 331 - -
Cma08g00169 1009 Coils Coil 139 159 - -
Cma08g00169 1009 MobiDBLite consensus disorder prediction 354 374 - -
Cma08g00169 1009 Pfam Protein of unknown function (DUF1664) 172 292 IPR012458 -
Cma08g00169 1009 Coils Coil 7 27 - -
Cma08g00169 1009 MobiDBLite consensus disorder prediction 1 32 - -
Cma08g00169 1009 PANTHER DNA PRIMASE LARGE SUBUNIT 499 942 - -
Cma08g00169 1009 PANTHER DNA PRIMASE LARGE SUBUNIT 499 942 IPR007238 GO:0006269
Cma08g00169 1009 MobiDBLite consensus disorder prediction 316 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00169 Cma-Chr8:923332 Cma18g01171 Cma-Chr18:9379613 9.36E-24 dispersed
Cma17g01436 Cma-Chr17:9437737 Cma08g00169 Cma-Chr8:923332 4.87E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00169 K02685 - csv:101217274 830.861