Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00169 | ATGAAGGGGGCTGCGATGGCACGAGCGGAAGAAGAAGAAGTGGCGCGGAAGAAGCGACGGCGCGACGAAAAAGAAGAAGTGGCGCGCGATTCTTCGTCGTCCACCGACCACAATCCGCCGCGACTTCATTTGCTGAGCTTCGATTTTCAAGAACGTTCTGATGCTCGGCCACCACTGCGTCGAGTAACCACCGCATCACCACTCTCACTCACACATCGTTGCCACTGCGATGGCGATTCCTTTCGGGAAGATCACCATTCTCGTTGGAGCTGGTTCATACACTGTATTGTTGGCTCTGTTCTGGCAAAAGAAGGACGCTTGCCATATGTATCCGATTTTGTATCAGGTGCTTTTAAGATTGCTCTAAAGCGTATCAGTCGAGATGATTCCAGCAGTCCAAAAAGCAAGCCACGAAATGAATCTTTAATGGCTCAGGTAAAAAGCTTACAGCAAGAACTGCAAATGTTAGCATCAAATCGTCAGATGACAATTGTGACTACTGGCGGGACAGGGGGTAGGAAATTTGGCGTAATCATTCTTGTAGTTGTAGTAGGATATGGGTTTGTTTGGATGAAGGGATGGAAACTTCCTGATATGATGTTTGCTACAAAGCGTAGTCTATCTGATGCTTGCAGTTCTGTTGCTAGACAGCTTGAAAATGTTTACTCATCCATCACGGCTACAAAACGGAATTTATCTTCAAAAATGGACAACATTGACAAAAGTTTGGATGAATCTTTGGATCTCACTGCCGGTACACAAGAACAGGTTTCGGAACTACGAGGTAAATCAGATACTTTTGGCAGGGATATTAAATCCGTTCATCATGCAGTCCAGACTTTGGAAAATAAACTATGGAGTTTTGAAGAAAAGCAGGAACAAACGACTGAAGGTGTTAGGAGATTGTGTAATTATGCTTGGAACATGGAGAATCAAAGGGCCGTGGAACGTACTCAGGCAATTCCTTCTAGTTCCAGTAGGCAAGCTCTTGAACTCCCTCCACCAACACCTTCACCAAAGCAAAATCGGTCGTTGCCGATTGGTTTTTCACCAGAGGCGCTGTCTCCCTCCGAGTTTAATTCTTCTTCTAACCAGGTTCAAGTTCATCGACGACCCCTCCAAAATACCGTCTCTGACCCCGGCTTGATGTTAGAAGGAACCAGAGATTCAAACGTGCAGTCGAGCAGCAGACTCGATACAACATCCAATGGAAGCAGTGTACCCAATGGGATCAGTACATCGGATTCCACCAGAAGCGAGGCTGGGAATTCCGGGCTATCAGGACTTGGATTTCTTACGAGAACGAGGAGTGCAGTGAGTGCAGTATTCCGGCAGTCTCGCCCAACTAATTCTAGCAGTGCCCAAACCCAGATGAAGAAGATATCGCATAGTTTCTGGTGGGTACAGAATTTTGTAGTTATGATTGTTATTAAGTTCTTTTGTTTTAGGACATTGGTTCGGTTATTTACTGTTCAAACCCGAAAACAATGGTCTGATCCGAGGAAATCTTCCACCGCCACCACTTCCTCGACCACTCTTCCACTCTATCGCTCCGCTCCTCCTCTCGAAGTCAGGCTTGAAGAATTCGAACTTTATGCCATAGATCGTCTTCGAGTTCTTAAAGGAATTTCTGATGGTTTATCTCGAGGAAAGAAATCTGAAGAAATGGAGAAACTGGTTAGAGGCTTGTTGAATGCCCATATGAAACATCCACAGGCATCCGAGGCTGTGAACAAGGATATAATATCTCACTTTGTTCTGCGCCTCGTATACTGCAGAACGGAGGACTTGAGAAAATGGTTTCTTTCTATGGAAACTATGCTCTTTCGACACCGTTTTCTTTCTGAAAGTCCTGAATCTCAGAAGCAGGTCTTTTCGGAGCTTGGCCTCTCATACAAAGCAATCAGTTATGCAGAGTTTGAGGCTGTGAAGGACAAATTGGTCCAAGTTGCTCGGTTGATTGGTCAGCCTGTACCAAGCGCTGATGCAATATACTATAAGGTACCATGGGAAGAAGTTCCAGAACTGGTGGCTGGTCGAAGGGTATTACTTCATAAAGGATATGCATATATTGCTATTTATCAGGTGGTTTCCCTTGTTGCAACACAATTCCGCAGTTACCTATCAAAGACCTTAAGTCTGACAAACAGGAAATGGACATCTACAATAAGAGAACAAGAGAAGGATCGGTTGACCCCTATCGTTGAAGCCCTTTGCACAAGCTACCTGGGTCCTGACTACTCACAGCCAACAGAGTATGCTGATATATCAATCAAAGACCTTGAACAAATTGCTAAAAGTTCATTTCCTCTTTGCATGCGGCACCTATTTGATAAGCTGAAAGAAGATCATCATTTGAAGCATGGAGGGAGAATGCAATTAGGTCTCTTTCTCAAGGGTGTTGGTTTGAAGCTTGATGATGCCCTTACTTTCTGGAGAGCTGAGTTCTCGCAGAGAGTTGGTGTTGAGAGGTTTGACAAAGAATATGCATACAGTATCAGGCATAACTATGGAAAAGAAGGCAAGAGAGTGGATTATTCACCTTATTCCTGTCAAAAAATTATCTCATCATCACCTGGTGTTGGAGATCATCATGGATGTCCCTATAGACATTTCAGTGAAGACAACTTAAGAGCAGCTCTAGGTAAAATGGGAGTAAATAACCAGAAAATAGAAGATATATTGGACAAAGTGCGAAATAGACATTATCAGTTGGCCTGCACCTTGACATTTGAATCGGTTCATGGTTCGTCGTGCGACGCTGGGATTAATCATCCAAACCAGTACTTCATTGATAGTCAAAAAGTTCTGCAATCTAAGAACAATTCAACAGCTTACGTGCTTAGCTATCCTTTTGTAGCACTGGAAAACGCTCTTGCAAGGCGAGTGGGTTCAAACCAGATCGAACTGAAGCGCCCATTATGTCGAAATCCGATTCCCTTCTGGTTTTTGAAGCCGTTTTTCAGCGTTCTGTTTCTTCAGTTCTTCCTCTTTGAGCTCTCTCAGATTGAAGTTGGAGCTTCACTTTGA | 3030 | 44.13 | MKGAAMARAEEEEVARKKRRRDEKEEVARDSSSSTDHNPPRLHLLSFDFQERSDARPPLRRVTTASPLSLTHRCHCDGDSFREDHHSRWSWFIHCIVGSVLAKEGRLPYVSDFVSGAFKIALKRISRDDSSSPKSKPRNESLMAQVKSLQQELQMLASNRQMTIVTTGGTGGRKFGVIILVVVVGYGFVWMKGWKLPDMMFATKRSLSDACSSVARQLENVYSSITATKRNLSSKMDNIDKSLDESLDLTAGTQEQVSELRGKSDTFGRDIKSVHHAVQTLENKLWSFEEKQEQTTEGVRRLCNYAWNMENQRAVERTQAIPSSSSRQALELPPPTPSPKQNRSLPIGFSPEALSPSEFNSSSNQVQVHRRPLQNTVSDPGLMLEGTRDSNVQSSSRLDTTSNGSSVPNGISTSDSTRSEAGNSGLSGLGFLTRTRSAVSAVFRQSRPTNSSSAQTQMKKISHSFWWVQNFVVMIVIKFFCFRTLVRLFTVQTRKQWSDPRKSSTATTSSTTLPLYRSAPPLEVRLEEFELYAIDRLRVLKGISDGLSRGKKSEEMEKLVRGLLNAHMKHPQASEAVNKDIISHFVLRLVYCRTEDLRKWFLSMETMLFRHRFLSESPESQKQVFSELGLSYKAISYAEFEAVKDKLVQVARLIGQPVPSADAIYYKVPWEEVPELVAGRRVLLHKGYAYIAIYQVVSLVATQFRSYLSKTLSLTNRKWTSTIREQEKDRLTPIVEALCTSYLGPDYSQPTEYADISIKDLEQIAKSSFPLCMRHLFDKLKEDHHLKHGGRMQLGLFLKGVGLKLDDALTFWRAEFSQRVGVERFDKEYAYSIRHNYGKEGKRVDYSPYSCQKIISSSPGVGDHHGCPYRHFSEDNLRAALGKMGVNNQKIEDILDKVRNRHYQLACTLTFESVHGSSCDAGINHPNQYFIDSQKVLQSKNNSTAYVLSYPFVALENALARRVGSNQIELKRPLCRNPIPFWFLKPFFSVLFLQFFLFELSQIEVGASL | 1009 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 923332 | 941959 | + | CmaCh08G001690.1 | Cma08g00169 | 298864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00169 | 1009 | Pfam | Eukaryotic and archaeal DNA primase, large subunit | 665 | 930 | IPR007238 | GO:0006269 | |
Cma08g00169 | 1009 | Gene3D | - | 478 | 738 | - | - | |
Cma08g00169 | 1009 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cma08g00169 | 1009 | MobiDBLite | consensus disorder prediction | 387 | 428 | - | - | |
Cma08g00169 | 1009 | CDD | PriL_PriS_Eukaryotic | 515 | 933 | IPR016558 | - | |
Cma08g00169 | 1009 | MobiDBLite | consensus disorder prediction | 316 | 331 | - | - | |
Cma08g00169 | 1009 | Coils | Coil | 139 | 159 | - | - | |
Cma08g00169 | 1009 | MobiDBLite | consensus disorder prediction | 354 | 374 | - | - | |
Cma08g00169 | 1009 | Pfam | Protein of unknown function (DUF1664) | 172 | 292 | IPR012458 | - | |
Cma08g00169 | 1009 | Coils | Coil | 7 | 27 | - | - | |
Cma08g00169 | 1009 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cma08g00169 | 1009 | PANTHER | DNA PRIMASE LARGE SUBUNIT | 499 | 942 | - | - | |
Cma08g00169 | 1009 | PANTHER | DNA PRIMASE LARGE SUBUNIT | 499 | 942 | IPR007238 | GO:0006269 | |
Cma08g00169 | 1009 | MobiDBLite | consensus disorder prediction | 316 | 428 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00169 | Cma-Chr8:923332 | Cma18g01171 | Cma-Chr18:9379613 | 9.36E-24 | dispersed | |
Cma17g01436 | Cma-Chr17:9437737 | Cma08g00169 | Cma-Chr8:923332 | 4.87E-154 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00169 | K02685 | - | csv:101217274 | 830.861 |