Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00170 ATGTATTTGAGACTCAGGGGCATTGGTCATATGGGTGAAGGATCAATGGATGACAATGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCATCGTCTTTGAGATTAACAAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATGACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTGCTTGCAATGATTTGAGCTCATCTTGGATCGGAACGATCAAGCCTGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGATGTTGCTGACAGAAGAAAAAGTATGTTTCCCGGGTTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAGCAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTCAGCCATACCGATGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGTGATGCCAACATCCGGTGCTACTCAATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCTGGTTTTGA 921 46.8 MYLRLRGIGHMGEGSMDDNEGTRVTLIESLSSSLRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYSNQGPRFLPFGNQLLSACNDLSSSWIGTIKPEHNDALCSSNSQLDVADRRKSMFPGLSGCDYKEKQPPFLNVGSSNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFSHTDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFWF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 942276 944782 + CmaCh08G001700.1 Cma08g00170 298865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00170 306 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 31 252 - -
Cma08g00170 306 Pfam SBP domain 52 125 IPR004333 GO:0003677
Cma08g00170 306 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 252 IPR044817 GO:0003677
Cma08g00170 306 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Cma08g00170 306 SUPERFAMILY SBT domain 50 131 IPR036893 GO:0003677|GO:0005634
Cma08g00170 306 Gene3D - 44 113 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00170 Cma-Chr8:942276 Cma13g00815 Cma-Chr13:6870551 7.43E-52 dispersed
Cma17g01437 Cma-Chr17:9453188 Cma08g00170 Cma-Chr8:942276 6.62E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35469 PF03110 SBP 1.40E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00170 - - csv:101217032 466.077