Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00170 | ATGTATTTGAGACTCAGGGGCATTGGTCATATGGGTGAAGGATCAATGGATGACAATGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCATCGTCTTTGAGATTAACAAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATGACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTGCTTGCAATGATTTGAGCTCATCTTGGATCGGAACGATCAAGCCTGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGATGTTGCTGACAGAAGAAAAAGTATGTTTCCCGGGTTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAGCAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTCAGCCATACCGATGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGTGATGCCAACATCCGGTGCTACTCAATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCTGGTTTTGA | 921 | 46.8 | MYLRLRGIGHMGEGSMDDNEGTRVTLIESLSSSLRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYSNQGPRFLPFGNQLLSACNDLSSSWIGTIKPEHNDALCSSNSQLDVADRRKSMFPGLSGCDYKEKQPPFLNVGSSNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFSHTDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFWF | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 942276 | 944782 | + | CmaCh08G001700.1 | Cma08g00170 | 298865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00170 | 306 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED | 31 | 252 | - | - | |
Cma08g00170 | 306 | Pfam | SBP domain | 52 | 125 | IPR004333 | GO:0003677 | |
Cma08g00170 | 306 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 31 | 252 | IPR044817 | GO:0003677 | |
Cma08g00170 | 306 | ProSiteProfiles | Zinc finger SBP-type profile. | 49 | 126 | IPR004333 | GO:0003677 | |
Cma08g00170 | 306 | SUPERFAMILY | SBT domain | 50 | 131 | IPR036893 | GO:0003677|GO:0005634 | |
Cma08g00170 | 306 | Gene3D | - | 44 | 113 | IPR036893 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00170 | Cma-Chr8:942276 | Cma13g00815 | Cma-Chr13:6870551 | 7.43E-52 | dispersed | |
Cma17g01437 | Cma-Chr17:9453188 | Cma08g00170 | Cma-Chr8:942276 | 6.62E-170 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35469 | PF03110 | SBP | 1.40E-28 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00170 | - | - | csv:101217032 | 466.077 |