Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00170 ATGTATTTGAGACTCAGGGGCATTGGTCATATGGGTGAAGGATCAATGGATGACAATGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCATCGTCTTTGAGATTAACAAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATGACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTGCTTGCAATGATTTGAGCTCATCTTGGATCGGAACGATCAAGCCTGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGATGTTGCTGACAGAAGAAAAAGTATGTTTCCCGGGTTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAGCAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTCAGCCATACCGATGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGTGATGCCAACATCCGGTGCTACTCAATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCTGGTTTTGA 921 46.8 MYLRLRGIGHMGEGSMDDNEGTRVTLIESLSSSLRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYSNQGPRFLPFGNQLLSACNDLSSSWIGTIKPEHNDALCSSNSQLDVADRRKSMFPGLSGCDYKEKQPPFLNVGSSNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFSHTDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFWF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 942276 944782 + CmaCh08G001700.1 Cma08g00170 298865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00170 306 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 31 252 - -
Cma08g00170 306 Pfam SBP domain 52 125 IPR004333 GO:0003677
Cma08g00170 306 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 252 IPR044817 GO:0003677
Cma08g00170 306 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Cma08g00170 306 SUPERFAMILY SBT domain 50 131 IPR036893 GO:0003677|GO:0005634
Cma08g00170 306 Gene3D - 44 113 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00170 - - - csv:101217032 466.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00170 Cma-Chr8:942276 Cma13g00815 Cma-Chr13:6870551 7.43E-52 dispersed
Cma17g01437 Cma-Chr17:9453188 Cma08g00170 Cma-Chr8:942276 6.62E-170 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50670 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50670 60.8 9.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35469 PF03110 SBP 1.40E-28 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00170 Cma_Chr08 FPKM 1.59418 1.09187 1.611124 0.984899 0.798367 1.371789 0.765275 4.927598 3.944475 4.124656