Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00172 ATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCAAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGACTCAGTACATGCTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAACGAAGCAAACAAGACACTGAAACAAAGGTTGATTGAAGGGTATCAAGTAAATGCACTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCAGCCTCCTAGCGATGCCTTCTTTCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTGACTGCTGGGCCGAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA 729 44.86 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQVNALQLNQSADDMMYGRQQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 956593 960816 + CmaCh08G001720.1 Cma08g00172 298867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00172 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma08g00172 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma08g00172 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma08g00172 242 Coils Coil 126 146 - -
Cma08g00172 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cma08g00172 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma08g00172 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma08g00172 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Cma08g00172 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma08g00172 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cma08g00172 242 Coils Coil 152 172 - -
Cma08g00172 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Cma08g00172 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma08g00172 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma08g00172 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma08g00172 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00172 Cma-Chr8:956593 Cma14g01149 Cma-Chr14:9050926 1.00E-110 dispersed
Cma08g00172 Cma-Chr8:956593 Cma08g00173 Cma-Chr8:963773 7.35E-36 tandem
Cma08g00942 Cma-Chr8:5875347 Cma08g00172 Cma-Chr8:956593 3.04E-74 transposed
Cma09g01239 Cma-Chr9:8306165 Cma08g00172 Cma-Chr8:956593 2.37E-39 transposed
Cma17g01438 Cma-Chr17:9458518 Cma08g00172 Cma-Chr8:956593 1.35E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35470 PF01486 K-box 3.50E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00172 - - csv:101216798 480.33