Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00177 ATGAACGTCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGCTGGCTGAAGCCTCCAGAGGTGTTCTTTATTTTACAGAATTATGAAAAATATCAGCTGACGGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGGCTTAAGGTCGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGTTGGATCCGTCATTTGACCACATTGTTCTAGTACACTATAGAGATATTAAGGAGGGAAGGCCTGGGACGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTACTTTTGGTTCCCATTCATCTCAAAGTTTTGCTTTGGAACATCGACAGAGTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTGTTGGGTCAAATAGTGCGGATGGGCAGCATGAAATATCAGAATTAAAAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAACGAAGACAGCTTGAAAGTCATTGATCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGACGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTATCCATGATAATAATTATACATCGTTTGAGATCCAAGATGCCAATGAAAAACATTCCGATTATGCTATGGCACACGAGATTATGTTTGATAGTGAAGGAACTCAACCATGGGGTTATGCACTTGGTTCACGTAAGACAGCTGATCTTGAATCTCAAGATAGACAGTCTCTCCTATGGAATGAAAATGAAAAATCATCATCGTCTTTGAGTAAAAGTACAACTGTGGACAATGAACACTACAACTTGGTGCATAGAAGAGGAAAAACTTCTGCTTTGCTTGGAAGCTGCACATCTTCAGAATATACTTCACCACTAGACAATCATGATGTTAATTCCAGCTACCATATACCATTTCTTAAAGAAGACCATGGAAATTCTTTTGAAGTTGATACCGGTTTAATTGTTCCACAAGTGCAGAAATTTATGATCCGCCAAATTGTTCCTGAGAAGGGTTATGCCACTGAGAATACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCTGAATCTCCTTGGGCTTGTATGTTCGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGACTCTTTATTGCGAAGCACCTCCACACCTTCCTGGGAAAGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCTACTCACATTCTAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTGTTACTGGTCAGGCTTGTCCAATTACTGCTCTCTGACTCTAACACGGTAAATTCTGAAGTAAGGAGCAATTATGTGAAAGCTGGTGATGATCAGTGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGATACCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTGCTTCCCAACCGAAAGATAGACATGATCTGGCAGGCTGTTCCTTGTCTAAGAAAGAACAGGGTATTATACACATGATTGCTGGCTTGGGCTACGTGTGGGCATTAAACCCAATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTTCATTGGGCCGCACGATTTGGAAGGGAAAAAATGGTTGCTTCACTAATAGCCTCAGGAGCATCAGCTGGCTCTGTGACTGATCCTAGTGCACAAGATCCAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTATCATCCCTCACATTTGAAGAAGGTGAACTTTCCAAGGGCTCTGCTGAGGTAGAAGCAGAAATGACTGTAAATAGCATTTCAGAGGGGAACCACACTTCTACTGAGGACTATACCCCTCTAAGCGATACATTAGCTGCAGTAAGGAACGCTGCACAGGCAGCAGCACGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGAGACGGCAGAAAGAGGCAGTTTTTGCAGCTTGCATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCAATGTCAAAGTTAAAGTTTTCTAATCGACGTGATTGCAATGCTGCTGCATTATCTATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTCAAGAGTTCTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGCATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGTTTTCGTAGCGATATAGAGTCCATTGATGAAAATGAAGATGACGATATTATAAAGTGCGATCGATGGTTAACTCTCTGGATGCTTGTCAGCAATACCATCGTACGCTTAAAGGATTTCGAGAAGCTAAGGCTGAGCTTAATGGTGCCGATCGTTAATCCACAGGATCGACTTCTCTCGTCGACATTTCTGGGACTGAAGATTGTAATCAATATCCTAAGTAGGGATTTGAACTCTCGAAAAGTTTTTTTACCAACCCGACGTTGTTCGTTGGTCATCCGTATGGAATTTTCACCTCTAATATTGTTTCATTGTAAAAATTCAAGATACGAAGGACAATGGAACACTTGA 2946 41.31 MNVGYDINDLYREAQTRWLKPPEVFFILQNYEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDIKEGRPGTESVPQLSPASASTFGSHSSQSFALEHRQSSLSPGSVEVSSDTGNRTVGSNSADGQHEISELKNECEVSQALRRIEEQLSLNEDSLKVIDPFYGHEEGSNSNLIDYYEMSNDDQFSVLQHSENAIHDNNYTSFEIQDANEKHSDYAMAHEIMFDSEGTQPWGYALGSRKTADLESQDRQSLLWNENEKSSSSLSKSTTVDNEHYNLVHRRGKTSALLGSCTSSEYTSPLDNHDVNSSYHIPFLKEDHGNSFEVDTGLIVPQVQKFMIRQIVPEKGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGTLYCEAPPHLPGKVSFCITSGNREPCSEFREFEYKMNVCSHCYSHSSGATKSPEELLLLVRLVQLLLSDSNTVNSEVRSNYVKAGDDQWSSLIEGLLVGSETPSDTVDWLLQELLKDKLHLWLASQPKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGSVTDPSAQDPDGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKGSAEVEAEMTVNSISEGNHTSTEDYTPLSDTLAAVRNAAQAAARIQSAFRAHSFRKRRQKEAVFAACIDEYGIDPNDIQGLLAMSKLKFSNRRDCNAAALSIQKKYRGWKGRQEFLSIRQKVVKIQAHVRGHQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSDIESIDENEDDDIIKCDRWLTLWMLVSNTIVRLKDFEKLRLSLMVPIVNPQDRLLSSTFLGLKIVINILSRDLNSRKVFLPTRRCSLVIRMEFSPLILFHCKNSRYEGQWNT 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 990472 1006230 + CmaCh08G001770.1 Cma08g00177 298872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00177 981 Pfam CG-1 domain 13 126 IPR005559 GO:0003677
Cma08g00177 981 ProSiteProfiles IQ motif profile. 740 768 IPR000048 GO:0005515
Cma08g00177 981 ProSiteProfiles Ankyrin repeat region circular profile. 622 648 - -
Cma08g00177 981 Pfam IQ calmodulin-binding motif 799 817 IPR000048 GO:0005515
Cma08g00177 981 Pfam IQ calmodulin-binding motif 822 841 IPR000048 GO:0005515
Cma08g00177 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 848 IPR027417 -
Cma08g00177 981 MobiDBLite consensus disorder prediction 131 191 - -
Cma08g00177 981 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677
Cma08g00177 981 ProSiteProfiles IQ motif profile. 820 844 IPR000048 GO:0005515
Cma08g00177 981 ProSiteProfiles Ankyrin repeat profile. 622 654 IPR002110 GO:0005515
Cma08g00177 981 SMART ANK_2a 622 654 IPR002110 GO:0005515
Cma08g00177 981 CDD IPT 405 483 - -
Cma08g00177 981 SMART iq_5 819 841 IPR000048 GO:0005515
Cma08g00177 981 SMART iq_5 739 761 IPR000048 GO:0005515
Cma08g00177 981 SMART iq_5 796 818 IPR000048 GO:0005515
Cma08g00177 981 SUPERFAMILY Ankyrin repeat 592 684 IPR036770 -
Cma08g00177 981 SMART CG_1_2 10 128 IPR005559 GO:0003677
Cma08g00177 981 Pfam Ankyrin repeats (3 copies) 598 681 IPR002110 GO:0005515
Cma08g00177 981 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 1 887 - -
Cma08g00177 981 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 887 - -
Cma08g00177 981 Gene3D - 486 687 IPR036770 -
Cma08g00177 981 Pfam IPT/TIG domain 400 472 IPR002909 -
Cma08g00177 981 Gene3D - 796 844 - -
Cma08g00177 981 ProSiteProfiles IQ motif profile. 798 826 IPR000048 GO:0005515
Cma08g00177 981 SUPERFAMILY E set domains 400 482 IPR014756 -
Cma08g00177 981 MobiDBLite consensus disorder prediction 137 190 - -
Cma08g00177 981 Gene3D Immunoglobulins 394 485 IPR013783 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00177 Cma-Chr8:990472 Cma19g00254 Cma-Chr19:1804145 1.38E-46 dispersed
Cma17g01441 Cma-Chr17:9468880 Cma08g00177 Cma-Chr8:990472 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35472 PF03859 CG-1 3.80E-48 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00177 K21596 - csv:101222798 1414.44