Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00177 ATGAACGTCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGCTGGCTGAAGCCTCCAGAGGTGTTCTTTATTTTACAGAATTATGAAAAATATCAGCTGACGGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGGCTTAAGGTCGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGTTGGATCCGTCATTTGACCACATTGTTCTAGTACACTATAGAGATATTAAGGAGGGAAGGCCTGGGACGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTACTTTTGGTTCCCATTCATCTCAAAGTTTTGCTTTGGAACATCGACAGAGTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTGTTGGGTCAAATAGTGCGGATGGGCAGCATGAAATATCAGAATTAAAAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAACGAAGACAGCTTGAAAGTCATTGATCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGACGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTATCCATGATAATAATTATACATCGTTTGAGATCCAAGATGCCAATGAAAAACATTCCGATTATGCTATGGCACACGAGATTATGTTTGATAGTGAAGGAACTCAACCATGGGGTTATGCACTTGGTTCACGTAAGACAGCTGATCTTGAATCTCAAGATAGACAGTCTCTCCTATGGAATGAAAATGAAAAATCATCATCGTCTTTGAGTAAAAGTACAACTGTGGACAATGAACACTACAACTTGGTGCATAGAAGAGGAAAAACTTCTGCTTTGCTTGGAAGCTGCACATCTTCAGAATATACTTCACCACTAGACAATCATGATGTTAATTCCAGCTACCATATACCATTTCTTAAAGAAGACCATGGAAATTCTTTTGAAGTTGATACCGGTTTAATTGTTCCACAAGTGCAGAAATTTATGATCCGCCAAATTGTTCCTGAGAAGGGTTATGCCACTGAGAATACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCTGAATCTCCTTGGGCTTGTATGTTCGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGACTCTTTATTGCGAAGCACCTCCACACCTTCCTGGGAAAGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCTACTCACATTCTAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTGTTACTGGTCAGGCTTGTCCAATTACTGCTCTCTGACTCTAACACGGTAAATTCTGAAGTAAGGAGCAATTATGTGAAAGCTGGTGATGATCAGTGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGATACCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTGCTTCCCAACCGAAAGATAGACATGATCTGGCAGGCTGTTCCTTGTCTAAGAAAGAACAGGGTATTATACACATGATTGCTGGCTTGGGCTACGTGTGGGCATTAAACCCAATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTTCATTGGGCCGCACGATTTGGAAGGGAAAAAATGGTTGCTTCACTAATAGCCTCAGGAGCATCAGCTGGCTCTGTGACTGATCCTAGTGCACAAGATCCAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTATCATCCCTCACATTTGAAGAAGGTGAACTTTCCAAGGGCTCTGCTGAGGTAGAAGCAGAAATGACTGTAAATAGCATTTCAGAGGGGAACCACACTTCTACTGAGGACTATACCCCTCTAAGCGATACATTAGCTGCAGTAAGGAACGCTGCACAGGCAGCAGCACGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGAGACGGCAGAAAGAGGCAGTTTTTGCAGCTTGCATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCAATGTCAAAGTTAAAGTTTTCTAATCGACGTGATTGCAATGCTGCTGCATTATCTATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTCAAGAGTTCTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGCATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGTTTTCGTAGCGATATAGAGTCCATTGATGAAAATGAAGATGACGATATTATAAAGTGCGATCGATGGTTAACTCTCTGGATGCTTGTCAGCAATACCATCGTACGCTTAAAGGATTTCGAGAAGCTAAGGCTGAGCTTAATGGTGCCGATCGTTAATCCACAGGATCGACTTCTCTCGTCGACATTTCTGGGACTGAAGATTGTAATCAATATCCTAAGTAGGGATTTGAACTCTCGAAAAGTTTTTTTACCAACCCGACGTTGTTCGTTGGTCATCCGTATGGAATTTTCACCTCTAATATTGTTTCATTGTAAAAATTCAAGATACGAAGGACAATGGAACACTTGA 2946 41.31 MNVGYDINDLYREAQTRWLKPPEVFFILQNYEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDIKEGRPGTESVPQLSPASASTFGSHSSQSFALEHRQSSLSPGSVEVSSDTGNRTVGSNSADGQHEISELKNECEVSQALRRIEEQLSLNEDSLKVIDPFYGHEEGSNSNLIDYYEMSNDDQFSVLQHSENAIHDNNYTSFEIQDANEKHSDYAMAHEIMFDSEGTQPWGYALGSRKTADLESQDRQSLLWNENEKSSSSLSKSTTVDNEHYNLVHRRGKTSALLGSCTSSEYTSPLDNHDVNSSYHIPFLKEDHGNSFEVDTGLIVPQVQKFMIRQIVPEKGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGTLYCEAPPHLPGKVSFCITSGNREPCSEFREFEYKMNVCSHCYSHSSGATKSPEELLLLVRLVQLLLSDSNTVNSEVRSNYVKAGDDQWSSLIEGLLVGSETPSDTVDWLLQELLKDKLHLWLASQPKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGSVTDPSAQDPDGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKGSAEVEAEMTVNSISEGNHTSTEDYTPLSDTLAAVRNAAQAAARIQSAFRAHSFRKRRQKEAVFAACIDEYGIDPNDIQGLLAMSKLKFSNRRDCNAAALSIQKKYRGWKGRQEFLSIRQKVVKIQAHVRGHQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSDIESIDENEDDDIIKCDRWLTLWMLVSNTIVRLKDFEKLRLSLMVPIVNPQDRLLSSTFLGLKIVINILSRDLNSRKVFLPTRRCSLVIRMEFSPLILFHCKNSRYEGQWNT 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 990472 1006230 + CmaCh08G001770.1 Cma08g00177 298872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00177 981 Pfam CG-1 domain 13 126 IPR005559 GO:0003677
Cma08g00177 981 ProSiteProfiles IQ motif profile. 740 768 IPR000048 GO:0005515
Cma08g00177 981 ProSiteProfiles Ankyrin repeat region circular profile. 622 648 - -
Cma08g00177 981 Pfam IQ calmodulin-binding motif 799 817 IPR000048 GO:0005515
Cma08g00177 981 Pfam IQ calmodulin-binding motif 822 841 IPR000048 GO:0005515
Cma08g00177 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 848 IPR027417 -
Cma08g00177 981 MobiDBLite consensus disorder prediction 131 191 - -
Cma08g00177 981 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677
Cma08g00177 981 ProSiteProfiles IQ motif profile. 820 844 IPR000048 GO:0005515
Cma08g00177 981 ProSiteProfiles Ankyrin repeat profile. 622 654 IPR002110 GO:0005515
Cma08g00177 981 SMART ANK_2a 622 654 IPR002110 GO:0005515
Cma08g00177 981 CDD IPT 405 483 - -
Cma08g00177 981 SMART iq_5 819 841 IPR000048 GO:0005515
Cma08g00177 981 SMART iq_5 739 761 IPR000048 GO:0005515
Cma08g00177 981 SMART iq_5 796 818 IPR000048 GO:0005515
Cma08g00177 981 SUPERFAMILY Ankyrin repeat 592 684 IPR036770 -
Cma08g00177 981 SMART CG_1_2 10 128 IPR005559 GO:0003677
Cma08g00177 981 Pfam Ankyrin repeats (3 copies) 598 681 IPR002110 GO:0005515
Cma08g00177 981 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 1 887 - -
Cma08g00177 981 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 887 - -
Cma08g00177 981 Gene3D - 486 687 IPR036770 -
Cma08g00177 981 Pfam IPT/TIG domain 400 472 IPR002909 -
Cma08g00177 981 Gene3D - 796 844 - -
Cma08g00177 981 ProSiteProfiles IQ motif profile. 798 826 IPR000048 GO:0005515
Cma08g00177 981 SUPERFAMILY E set domains 400 482 IPR014756 -
Cma08g00177 981 MobiDBLite consensus disorder prediction 137 190 - -
Cma08g00177 981 Gene3D Immunoglobulins 394 485 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00177 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1414.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00177 Cma-Chr8:990472 Cma19g00254 Cma-Chr19:1804145 1.38E-46 dispersed
Cma17g01441 Cma-Chr17:9468880 Cma08g00177 Cma-Chr8:990472 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35472 PF03859 CG-1 3.80E-48 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00177 Cma_Chr08 FPKM 8.097505 10.060253 13.20784 14.828239 7.54491 7.760915 8.512439 12.619701 11.655215 12.697916