Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00179 ATGAACTGGTTCATTAATGAAGTTATGGAAGCCAAGGTTGGTTTGGTATGGGTCCAGTTTTGGGAGAAGCTCATTGGAAAGTGCTGCAAGATGCATCACCAGTACTATCAGTATATTGGATCCCAGAAAGCTAGAAACACTTGGTGGAGAAGGGTTTTGGTGGCCTGGGTTCTTTGTTCTGTGTTTGGTTCTTTGTGGATCTTCCATTACATGAGCTCTCAAGCTACAGAGAAGAGGAAAGAGGGGTTGGGAAGCATGTGTGATGAGCGGGCTCGGATGCTTCAAGATCAGTTCAATGTCAGTATGAACCATATCCAAGCAATGTCCATACTCATCTCCACCTTCCATCATGCCAAGAATCCTTCTGCTATAGATCAGAGGACATTTGCGAGGTACACGGAACGAACTGCGTTCGAGAGGCCTCTTACCAGTGGTGTAGCGTATGCGGTAAGGGTGCTCCATTCGGAACGAGAGCGTTTCGAGAAGCAGCAGGGGTGGACAATTAAAAGGATGGATAAAATTGAACAAAGTCCGGTTCATGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCGCCGACCCAAGACGAATATGCTCCCGTTATCTTCGCACAGGATACGATTTCTCATGTCGTTTCTCTTGATATGCTGTCGGGAAAGGAAGACAGGAAGAACGTTTTACGAGCTAGAGCATCGGGAAAGGGAGTGTTAACAGCTCCATTCAAATTGATCAAAACAAATCGCCTCGGAGTCATACTTACGTTTGCTGTCTACAAGAGAGATCTTCCCTCGAATGCCACTCCAAACGAGAGGATTCAAGCTACAGATGGATATCTTGGTGGAGTTTTTGATATCGAGTCGCTTGTGGAGAAGCTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACTACGAACCAATCACACCCGATCAGTATGTACGGTAAAGACGTATCAGAAGACGGGTTGCAGCATGTTAGCCCGCTTAACTTTGGGGATCCAGATAGGAAGCACGAGATGCGATGCAGATTCAAACAAAAACAACCATGGCCGTGGTTAGCAATATCAACTTCAATTGGCATACTCATTATTGCATTGCTTTTGGGGTATATATTTCACGCAACCTTGAACCGTATCATGAAAGTGGAGGACGATTATCACGAGATGATGGAACTCAAGAAACGGGCAGAAGCTGCCGATGTTGCGAAATCTCAGTTCCTTGCAACCGTGTCTCATGAGATCAGATCCCCAATGAACGGCGTTCTAGGGATGTTGGATTTGCTTATGGACACAGGCTTGGATTTCACTCAACAAGATTTTGTTAGAAGTGTACAAGATAGTGGGAAGGCTTTGGTGTCATTGGTAAATGAGGTTTTGGATCAGGCAAAGATTGAATCTGGAAAGCTTGAGCTTGAAGCCATTCCATTCAATCTGCAAGCAATTTTGGATGATATTTTGTCACTTTTTTCTGGGAAATCTCAAGAGAAAGGATTGGAGCTCGCAGTTTACATCTCGGACAGCGTCCCCGAGATGCTTGTCGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTCGTGGGGAACTCGATCAAGTTCACAGAGCAAGGACATATATTTATCACAGTTAATCTGGTTGAGGAGGTTCTTGAGTCGATTGATCTCGAGATCGAGTCATCAACGAATAGCACGTTGAGTGGCTATCCGATTGCCAATAGGCGTATGAGCTGGGCTGGATTTAAAACATTGAGTCAAGACGGACCGACGGCTTGCCATTTCCCGCCATTGTCACCAGACCATATTAACCTCATGGTATCCGTGGAAGATACAGGCGTTGGCATTCCCGTAGAAGCGCAATCACGTGTTTTCACTCCTTTCATGCAGGTTCAACCGTCCATATCTAGAACACACGGAGGAACGGGTATCGGGCTGAGTATTAGCAAATGTTTGGTTGGTCTGATGAAGGGGGAGATTGGTTTTGCAAGTGTACCTACGATTGGGTCGACCTTCACATTTACTGTGGTTTTCTCGAACGAGCCAAGTGAGTATAACAAATCCCAGCCAATAAAGAACACTTCCATCTCAGCGTCCTCGGAATTCAAGGGCATGAGGGCATTAGTCGTGGACCATCGACCGATTCGAGCCAAAGTATCGAGATATCATATTCAACGTCTTGGAATAAACGTGGAGTTATTACCTGACTTGAACCAATGTGTGCATACCATGATTGGTGGTTCAGCTATCAATATGATCTTTGTTGAGCAAGATCTTTGGGATAAGGACACGAGCATATCAGATCTTTTTATCCACAACTTGAGAAATTCTAATGGGGTTCCTCCCAAACTGTTTCTTCTTACTAACTCCAGCGATATAATTTCTGATGTACTAACTCCCATAGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTTGCTGCCTCTCTACACCGCTTCATGGGCGTCCGAATTAATCGCAACAGAGAGCTTCCTGTACACTCTCTCCGTCATTTACTTCTCGGTCGGAAAATTCTTATCATAGACGACAATAAGGTTAACCGTATCGTTGCTGCTGGTGCTCTAAAACGGTATGGAGCTGATGTCGTATGCAAAAACAGTGGAATAGATGCAATCCGATTGCTTACGCCACCCCATCGATTCGATGCTTGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAAGCTACACGAAGAATTCGGGAAATCGAATGTCGTATCAACGACAGTATCAAAGTTGGAGAACAATCAAAAGAAGCATACGAAAATAAATGTAATTGGCACGTACCCATCTTCGCCATGACTGCAGACGTAATCCAGGCGACACATGAGAAATGTCTTCGGTGTGGGATGGATGGATACGTTACGAAGCCATTTGAAATCGATCTACTTTACCGAGAGGTTTCTCAGTTTTTCCACAGTACCTCAAATGGAACTTTATAG 2976 44.79 MNWFINEVMEAKVGLVWVQFWEKLIGKCCKMHHQYYQYIGSQKARNTWWRRVLVAWVLCSVFGSLWIFHYMSSQATEKRKEGLGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSERERFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGKEDRKNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAISTSIGILIIALLLGYIFHATLNRIMKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRSPMNGVLGMLDLLMDTGLDFTQQDFVRSVQDSGKALVSLVNEVLDQAKIESGKLELEAIPFNLQAILDDILSLFSGKSQEKGLELAVYISDSVPEMLVGDPGRFRQIITNLVGNSIKFTEQGHIFITVNLVEEVLESIDLEIESSTNSTLSGYPIANRRMSWAGFKTLSQDGPTACHFPPLSPDHINLMVSVEDTGVGIPVEAQSRVFTPFMQVQPSISRTHGGTGIGLSISKCLVGLMKGEIGFASVPTIGSTFTFTVVFSNEPSEYNKSQPIKNTSISASSEFKGMRALVVDHRPIRAKVSRYHIQRLGINVELLPDLNQCVHTMIGGSAINMIFVEQDLWDKDTSISDLFIHNLRNSNGVPPKLFLLTNSSDIISDVLTPIVILKPLRAGMLAASLHRFMGVRINRNRELPVHSLRHLLLGRKILIIDDNKVNRIVAAGALKRYGADVVCKNSGIDAIRLLTPPHRFDACFMDIQMPEMDGFEATRRIREIECRINDSIKVGEQSKEAYENKCNWHVPIFAMTADVIQATHEKCLRCGMDGYVTKPFEIDLLYREVSQFFHSTSNGTL 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1008979 1013964 - CmaCh08G001790.1 Cma08g00179 298874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00179 991 Gene3D - 842 987 - -
Cma08g00179 991 Gene3D - 377 470 - -
Cma08g00179 991 CDD HisKA 407 468 IPR003661 GO:0000155|GO:0007165
Cma08g00179 991 ProSiteProfiles Response regulatory domain profile. 846 983 IPR001789 GO:0000160
Cma08g00179 991 CDD REC_hyHK_CKI1_RcsC-like 847 979 - -
Cma08g00179 991 ProSiteProfiles CHASE domain profile. 120 346 IPR006189 -
Cma08g00179 991 PRINTS Bacterial sensor protein C-terminal signature 608 622 IPR004358 GO:0016310|GO:0016772
Cma08g00179 991 PRINTS Bacterial sensor protein C-terminal signature 626 636 IPR004358 GO:0016310|GO:0016772
Cma08g00179 991 PRINTS Bacterial sensor protein C-terminal signature 643 661 IPR004358 GO:0016310|GO:0016772
Cma08g00179 991 PRINTS Bacterial sensor protein C-terminal signature 667 680 IPR004358 GO:0016310|GO:0016772
Cma08g00179 991 SMART CHASE_2 120 321 IPR006189 -
Cma08g00179 991 SMART REC_2 845 979 IPR001789 GO:0000160
Cma08g00179 991 SMART HKATPase_4 519 683 IPR003594 -
Cma08g00179 991 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 461 679 IPR036890 -
Cma08g00179 991 Pfam Response regulator receiver domain 847 977 IPR001789 GO:0000160
Cma08g00179 991 SUPERFAMILY CheY-like 844 983 IPR011006 -
Cma08g00179 991 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 392 473 IPR036097 GO:0000155|GO:0007165
Cma08g00179 991 Gene3D - 71 123 - -
Cma08g00179 991 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 985 - -
Cma08g00179 991 ProSiteProfiles Histidine kinase domain profile. 414 683 IPR005467 -
Cma08g00179 991 Gene3D CHASE domain 124 353 IPR042240 -
Cma08g00179 991 Pfam CHASE domain 123 319 IPR006189 -
Cma08g00179 991 Gene3D - 471 684 IPR036890 -
Cma08g00179 991 Pfam His Kinase A (phospho-acceptor) domain 407 472 IPR003661 GO:0000155|GO:0007165
Cma08g00179 991 CDD PRTases_typeI 796 872 IPR000836 -
Cma08g00179 991 PANTHER HISTIDINE KINASE 3 24 985 - -
Cma08g00179 991 Coils Coil 384 404 - -
Cma08g00179 991 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 519 681 IPR003594 -
Cma08g00179 991 SUPERFAMILY CheY-like 704 824 IPR011006 -
Cma08g00179 991 SMART HisKA_10 407 472 IPR003661 GO:0000155|GO:0007165
Cma08g00179 991 CDD HATPase_EvgS-ArcB-TorS-like 524 681 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00179 Cma-Chr8:1008979 Cma20g00673 Cma-Chr20:3087195 0 dispersed
Cma17g01064 Cma-Chr17:7618371 Cma08g00179 Cma-Chr8:1008979 5.70E-36 dispersed
Cma17g01443 Cma-Chr17:9486488 Cma08g00179 Cma-Chr8:1008979 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35473 PF03924 CHASE 2.10E-38 CL0165 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00179 K14489 - csv:101216313 1682.92