Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00188 ATGATGAGAGAGAGAAGAACAAGGTGGCTTGTTCTCTCCCTTGTGGGGCTAGCCTTGATGAGCTGCCTGTGCAGCGTGAAGGCTGAGAACACATTGCAGCCGCCGGTGAAGCTTATATGGCATTACTACAAGCTTAACACAACATGCCCTGATGCTGAGACATACATAAAGCATCAAGTCAAATTGTTTTGGCAAAAGGATAAGAGCATCACTGCCAAGTTCCTCCGCTTGCTCTCCGCCGATTGCCTCTCCAAAAACGGTTGTGATGGTTCGATACTTCTCGATGGACGAAACTCAGAGAAAAACGCACCACAAAACCAAGGCCTAGAAGGGTTCGAAGAAATCGACAAGATCAAAATTGTACTCGAAGACCGTTGTCCGGGTGTTGTTTCTTGTACAGATATTCTTAACCTAGCCACTCGGGACGCTGCCCATTTGGCCGGTGCACCGTCGTATCCAGTTTATACGGGAAGGAGGGATTGTTTAAGAACGAGTATTGATGCGGTAGATTTCCCGTCCCCCTCTATATCATGGCAAGAAGGGCTAGCATATTTCGAGTCCAAGAGTCTCGATGTCTTAGACATGGCAACACTTCTAGGAGCACATTCAATGGGGAAAACACATTGCAGCTACATCAAGGACAGGCTATACAATTTCAATGGCACAAAAAAACCAGACCCAACAATGAACAAATCATTGTTAAAAGAGCTTCAAAAGAAATGCCCAAAGAAATCAAAAACAAACCCAACAGTGAATCTAACACCAAAATCTGGAAATGACTATCAATTCACAGGTCTGTACTACTCGAAGATCCTTTCGAAGAAGGCGGTACTCGGGATCGACCAACAGCTCCGTTTCGGGGACGACACGATGCAAATTGCCCAAGAGTTTGCTCCAAAATCTGGATTTGAAGACTTCCGGAGGTCCTTTGCTTTGTCCATGAGTAGGATGGGGAATATCAAGGTTTTGACCGGAAAAGATGGCGAGATCCGGCGAAATTGTCGACGGAGAAACTAG 1017 45.92 MMRERRTRWLVLSLVGLALMSCLCSVKAENTLQPPVKLIWHYYKLNTTCPDAETYIKHQVKLFWQKDKSITAKFLRLLSADCLSKNGCDGSILLDGRNSEKNAPQNQGLEGFEEIDKIKIVLEDRCPGVVSCTDILNLATRDAAHLAGAPSYPVYTGRRDCLRTSIDAVDFPSPSISWQEGLAYFESKSLDVLDMATLLGAHSMGKTHCSYIKDRLYNFNGTKKPDPTMNKSLLKELQKKCPKKSKTNPTVNLTPKSGNDYQFTGLYYSKILSKKAVLGIDQQLRFGDDTMQIAQEFAPKSGFEDFRRSFALSMSRMGNIKVLTGKDGEIRRNCRRRN 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1059496 1061359 - CmaCh08G001880.1 Cma08g00188 298883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00188 338 PANTHER PEROXIDASE 61-RELATED 13 336 - -
Cma08g00188 338 PRINTS Plant peroxidase signature 49 68 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 PRINTS Plant peroxidase signature 110 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 PRINTS Plant peroxidase signature 129 139 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 PRINTS Plant peroxidase signature 148 163 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 PRINTS Plant peroxidase signature 270 287 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 PRINTS Plant peroxidase signature 312 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 SUPERFAMILY Heme-dependent peroxidases 44 338 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
Cma08g00188 338 PRINTS Haem peroxidase superfamily signature 130 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 PRINTS Haem peroxidase superfamily signature 148 160 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 Gene3D Peroxidase, domain 2 172 320 - -
Cma08g00188 338 Gene3D - 46 338 - -
Cma08g00188 338 PANTHER PEROXIDASE 25-RELATED 13 336 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 Pfam Peroxidase 57 298 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 ProSiteProfiles Plant heme peroxidase family profile. 37 338 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma08g00188 338 CDD secretory_peroxidase 37 336 IPR033905 GO:0004601|GO:0042744
Cma08g00188 338 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00188 Cma-Chr8:1059496 Cma18g00648 Cma-Chr18:5907554 4.27E-72 dispersed
Cma08g00188 Cma-Chr8:1059496 Cma20g00633 Cma-Chr20:2948709 4.89E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00188 K00430 - csv:101213667 578.17