Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00189 ATGGACATAACCCTTTTCACAGCTAAAGAATCCCCCACAACCTTTTTCAGCCAAAGCCATGATCATCGTCATCGTCATCGTCTTCATCGTCTTCGGTTCCCCAATTTAGCCATGCAAAGCTCCACCAGCCAGTCGTCGGAGTACTCACTCGACCACTCTCTGCCCGCCACTGTGGGAAAATGGGCCTCCACCCTTCTCAATGAGTGCGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGCGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTCTGTAAAGTGACCGAAACTGGCCTCACTTGCTACAAAACCCTCATCACCGTTGCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGTAAGTCCGTGGATGACATTCGGGCACGTGGCATCGAACGGGGCAATTCTAGAGGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACCCTATTAGAATCGCTAGCCACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTCTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGATGAAGCCATTGCTATAAATTGCAATGGAGCTTTAAGAACCGTAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATTGTTGAAGAAGAAGCTGATTTCATAAGCTCGAAAAATAAGTTCTTGAGCTATTTTGATGAGTGTCTTAGATTTTACACGCTCTACTTCAAGATGTTGGAAGAGTGCTTTGAAGCAACGAGCAATGAGAAATTGGGTTTAGAAAGAGAGTGTTCGAGAAACATTGTGAGGCTCTTGGGGTGTGGTAATGAAAGCGAACTCGAACGAGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCAAAAGGCTTGAAGAACGAGGTTTTTCATCGGCTCGATTTAGTGACGATGTGATGGATGACGTTAAGGCTTTGCTCAAAAGGTATAAACCCGGTTGGTCGTTGATGCATTGGACCGGTGCTACCGACACGAACCGAGATGAAGAAGAAGGTGGTGATGATTCAAATGGAATTTATTTGACATGGAAGGAAGAACCAGTGGTGTGGATTTCAGCATGGAAACCCTAG 1359 45.7 MDITLFTAKESPTTFFSQSHDHRHRHRLHRLRFPNLAMQSSTSQSSEYSLDHSLPATVGKWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGLTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTVKIEERNAVISMLKSLKPRVLTIVEEEADFISSKNKFLSYFDECLRFYTLYFKMLEECFEATSNEKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDSNGIYLTWKEEPVVWISAWKP 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1066984 1068495 + CmaCh08G001890.1 Cma08g00189 298884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00189 452 Pfam GRAS domain family 64 451 IPR005202 -
Cma08g00189 452 PANTHER PROTEIN SHORT-ROOT-LIKE 40 451 - -
Cma08g00189 452 ProSiteProfiles GRAS family profile. 53 451 IPR005202 -
Cma08g00189 452 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 451 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00918 Cma-Chr3:6636169 Cma08g00189 Cma-Chr8:1066984 1.44E-150 dispersed
Cma07g00650 Cma-Chr7:2839388 Cma08g00189 Cma-Chr8:1066984 6.43E-150 dispersed
Cma08g00189 Cma-Chr8:1066984 Cma09g01087 Cma-Chr9:5848091 8.59E-48 dispersed
Cma08g00795 Cma-Chr8:4811559 Cma08g00189 Cma-Chr8:1066984 4.81E-45 transposed
Cma19g00942 Cma-Chr19:8381174 Cma08g00189 Cma-Chr8:1066984 1.08E-60 transposed
Cma17g00612 Cma-Chr17:5218538 Cma08g00189 Cma-Chr8:1066984 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35474 PF03514 GRAS 4.40E-94 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00189 - - csv:101206730 696.427