Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma08g00194 | ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTTTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTTCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGCAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCTACTAAGCTCCCCAAATGCGATATATGCCAAGACAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCATTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTTCTAGCCACGGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTCGACAAGGTCAAAATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAACTGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCGGTTGACGACTTTCTCCACTTCTCCGATCTCGAGTCGTCTGACAAGCAGAAAGAAGATCTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGGCTGTTTGGGGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCCGAGCTTCCTACATCACACTCAGGTAGTGCATTCGCATACAGGCCGACGAAGTCGAGCATGTCGTACAAAAAGCCTAGGATCGAGGTGGTAGACGAGGATGAGTTTTTTACCGTTCCCGATCTCGGATGA | 714 | 47.34 | MKIQCDVCEKAPATLICCADEAALCSKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKLPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEDLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSAFAYRPTKSSMSYKKPRIEVVDEDEFFTVPDLG | 237 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1096289 | 1099118 | + | CmaCh08G001940.1 | Cma08g00194 | 298889 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma08g00194 | 237 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
| Cma08g00194 | 237 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
| Cma08g00194 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
| Cma08g00194 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cma08g00194 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 237 | - | - | |
| Cma08g00194 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 24 | 1 | 237 | - | - | |
| Cma08g00194 | 237 | Gene3D | Classic Zinc Finger | 1 | 122 | - | - | |
| Cma08g00194 | 237 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Cma08g00194 | 237 | CDD | Bbox1_BBX-like | 56 | 98 | - | - | |
| Cma08g00194 | 237 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
| Cma08g00194 | 237 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma08g00194 | Cma-Chr8:1096289 | Cma16g00426 | Cma-Chr16:2125173 | 7.11E-09 | dispersed | |
| Cma17g00607 | Cma-Chr17:5142890 | Cma08g00194 | Cma-Chr8:1096289 | 8.97E-166 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35475 | PF00643 | zf-B_box | 1.50E-08 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma08g00194 | - | - | csv:101215327 | 443.736 |