Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00194 ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTTTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTTCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGCAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCTACTAAGCTCCCCAAATGCGATATATGCCAAGACAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCATTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTTCTAGCCACGGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTCGACAAGGTCAAAATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAACTGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCGGTTGACGACTTTCTCCACTTCTCCGATCTCGAGTCGTCTGACAAGCAGAAAGAAGATCTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGGCTGTTTGGGGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCCGAGCTTCCTACATCACACTCAGGTAGTGCATTCGCATACAGGCCGACGAAGTCGAGCATGTCGTACAAAAAGCCTAGGATCGAGGTGGTAGACGAGGATGAGTTTTTTACCGTTCCCGATCTCGGATGA 714 47.34 MKIQCDVCEKAPATLICCADEAALCSKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKLPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEDLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSAFAYRPTKSSMSYKKPRIEVVDEDEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1096289 1099118 + CmaCh08G001940.1 Cma08g00194 298889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00194 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cma08g00194 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cma08g00194 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cma08g00194 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma08g00194 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cma08g00194 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Cma08g00194 237 Gene3D Classic Zinc Finger 1 122 - -
Cma08g00194 237 CDD Bbox1_BBX-like 5 47 - -
Cma08g00194 237 CDD Bbox1_BBX-like 56 98 - -
Cma08g00194 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cma08g00194 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00194 - - - csv:101215327 443.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00194 Cma-Chr8:1096289 Cma16g00426 Cma-Chr16:2125173 7.11E-09 dispersed
Cma17g00607 Cma-Chr17:5142890 Cma08g00194 Cma-Chr8:1096289 8.97E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00009 CST 1 379 Orphan Transcription Factor Family AT5G61850 66.6 4.0e-122 435.6
Cma11g00003 CST 1 330 Orphan Transcription Factor Family AT5G61850 62.0 5.2e-114 408.7
Cma17g00607 . 1 167 Orphan Transcription Factor Family AT1G06040 67.8 1.8e-60 229.6
Cma08g00194 . 1 161 Orphan Transcription Factor Family AT1G06040 69.0 1.2e-59 226.9
Cma16g00426 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.5e-38 156.8
Cma04g00659 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 3.3e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35475 PF00643 zf-B_box 1.50E-08 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00194 Cma_Chr08 FPKM 22.529964 29.078175 54.090702 55.661335 55.580166 46.012455 56.246159 21.28158 20.753223 20.962143