Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00211 ATGGATTCTGAGGACGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGGGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCAAAATTTTACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTGGCTTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAACTCGAGTACGGAAGCTAGTTGGCTTGTTGGAAGAACCTGTTGTACATGCCTCAAATGCTAGAGAACATACATGTGGAATCTGTTTTGAGTCCCATCCTGTAAGTAGGATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTGAAGACATGGTTAATTCATTGGTCTCAAATGAAGACAGAGAGAAATATGATCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCTTCTGTTCATATGGCTTTTGCTGGAATTGCACCGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTACAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCATATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAAAGCAGGGCGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCAGTTCGACCAGAAACGACGACAATGCAACTCATTGGTCGTGCGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA 1761 44.58 MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREQNFTILNEFDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKLVGLLEEPVVHASNAREHTCGICFESHPVSRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGEDMVNSLVSNEDREKYDRYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALTDLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSKAGRSGRAKGGIIRTSSSTRNDDNATHWSCEHCTYVNARSATICEMCHQRH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1184895 1191587 - CmaCh08G002110.1 Cma08g00211 298906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00211 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 216 IPR013083 -
Cma08g00211 586 SUPERFAMILY Ran binding protein zinc finger-like 558 584 IPR036443 -
Cma08g00211 586 MobiDBLite consensus disorder prediction 517 537 - -
Cma08g00211 586 Gene3D - 557 586 - -
Cma08g00211 586 SMART zf_4 561 585 IPR001876 -
Cma08g00211 586 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Cma08g00211 586 SMART ibrneu5 270 340 IPR002867 -
Cma08g00211 586 SMART ibrneu5 204 266 IPR002867 -
Cma08g00211 586 Gene3D - 262 517 - -
Cma08g00211 586 SUPERFAMILY RING/U-box 131 213 - -
Cma08g00211 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 534 IPR031127 GO:0004842|GO:0016567
Cma08g00211 586 MobiDBLite consensus disorder prediction 517 558 - -
Cma08g00211 586 CDD RING-HC_RBR_TRIAD1_like 135 185 - -
Cma08g00211 586 SUPERFAMILY RING/U-box 204 273 - -
Cma08g00211 586 Pfam IBR domain, a half RING-finger domain 283 331 IPR002867 -
Cma08g00211 586 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 -
Cma08g00211 586 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Cma08g00211 586 ProSiteProfiles Zinc finger RING-type profile. 135 182 IPR001841 -
Cma08g00211 586 Pfam Ariadne domain 353 519 IPR045840 -
Cma08g00211 586 Coils Coil 352 372 - -
Cma08g00211 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 534 - -
Cma08g00211 586 SUPERFAMILY RING/U-box 285 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00211 Cma-Chr8:1184895 Cma20g00867 Cma-Chr20:4161716 9.44E-61 dispersed
Cma12g00993 Cma-Chr12:7900408 Cma08g00211 Cma-Chr8:1184895 0 transposed
Cma17g00596 Cma-Chr17:4947053 Cma08g00211 Cma-Chr8:1184895 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00211 K11968 - csv:101223037 1084.71