Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00211 | ATGGATTCTGAGGACGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGGGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCAAAATTTTACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTGGCTTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAACTCGAGTACGGAAGCTAGTTGGCTTGTTGGAAGAACCTGTTGTACATGCCTCAAATGCTAGAGAACATACATGTGGAATCTGTTTTGAGTCCCATCCTGTAAGTAGGATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTGAAGACATGGTTAATTCATTGGTCTCAAATGAAGACAGAGAGAAATATGATCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCTTCTGTTCATATGGCTTTTGCTGGAATTGCACCGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTACAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCATATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAAAGCAGGGCGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCAGTTCGACCAGAAACGACGACAATGCAACTCATTGGTCGTGCGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA | 1761 | 44.58 | MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREQNFTILNEFDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKLVGLLEEPVVHASNAREHTCGICFESHPVSRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGEDMVNSLVSNEDREKYDRYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALTDLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSKAGRSGRAKGGIIRTSSSTRNDDNATHWSCEHCTYVNARSATICEMCHQRH | 586 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1184895 | 1191587 | - | CmaCh08G002110.1 | Cma08g00211 | 298906 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00211 | 586 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 216 | IPR013083 | - | |
Cma08g00211 | 586 | SUPERFAMILY | Ran binding protein zinc finger-like | 558 | 584 | IPR036443 | - | |
Cma08g00211 | 586 | MobiDBLite | consensus disorder prediction | 517 | 537 | - | - | |
Cma08g00211 | 586 | Gene3D | - | 557 | 586 | - | - | |
Cma08g00211 | 586 | SMART | zf_4 | 561 | 585 | IPR001876 | - | |
Cma08g00211 | 586 | ProSiteProfiles | TRIAD supradomain profile. | 131 | 344 | IPR044066 | - | |
Cma08g00211 | 586 | SMART | ibrneu5 | 270 | 340 | IPR002867 | - | |
Cma08g00211 | 586 | SMART | ibrneu5 | 204 | 266 | IPR002867 | - | |
Cma08g00211 | 586 | Gene3D | - | 262 | 517 | - | - | |
Cma08g00211 | 586 | SUPERFAMILY | RING/U-box | 131 | 213 | - | - | |
Cma08g00211 | 586 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 22 | 534 | IPR031127 | GO:0004842|GO:0016567 | |
Cma08g00211 | 586 | MobiDBLite | consensus disorder prediction | 517 | 558 | - | - | |
Cma08g00211 | 586 | CDD | RING-HC_RBR_TRIAD1_like | 135 | 185 | - | - | |
Cma08g00211 | 586 | SUPERFAMILY | RING/U-box | 204 | 273 | - | - | |
Cma08g00211 | 586 | Pfam | IBR domain, a half RING-finger domain | 283 | 331 | IPR002867 | - | |
Cma08g00211 | 586 | Pfam | IBR domain, a half RING-finger domain | 204 | 266 | IPR002867 | - | |
Cma08g00211 | 586 | ProSitePatterns | Zinc finger RanBP2-type signature. | 563 | 582 | IPR001876 | - | |
Cma08g00211 | 586 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 182 | IPR001841 | - | |
Cma08g00211 | 586 | Pfam | Ariadne domain | 353 | 519 | IPR045840 | - | |
Cma08g00211 | 586 | Coils | Coil | 352 | 372 | - | - | |
Cma08g00211 | 586 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 22 | 534 | - | - | |
Cma08g00211 | 586 | SUPERFAMILY | RING/U-box | 285 | 333 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00211 | Cma-Chr8:1184895 | Cma20g00867 | Cma-Chr20:4161716 | 9.44E-61 | dispersed | |
Cma12g00993 | Cma-Chr12:7900408 | Cma08g00211 | Cma-Chr8:1184895 | 0 | transposed | |
Cma17g00596 | Cma-Chr17:4947053 | Cma08g00211 | Cma-Chr8:1184895 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00211 | K11968 | - | csv:101223037 | 1084.71 |