Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00211 ATGGATTCTGAGGACGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGGGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCAAAATTTTACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTGGCTTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAACTCGAGTACGGAAGCTAGTTGGCTTGTTGGAAGAACCTGTTGTACATGCCTCAAATGCTAGAGAACATACATGTGGAATCTGTTTTGAGTCCCATCCTGTAAGTAGGATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTGAAGACATGGTTAATTCATTGGTCTCAAATGAAGACAGAGAGAAATATGATCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCTTCTGTTCATATGGCTTTTGCTGGAATTGCACCGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTACAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCATATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAAAGCAGGGCGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCAGTTCGACCAGAAACGACGACAATGCAACTCATTGGTCGTGCGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA 1761 44.58 MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREQNFTILNEFDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKLVGLLEEPVVHASNAREHTCGICFESHPVSRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGEDMVNSLVSNEDREKYDRYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALTDLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSKAGRSGRAKGGIIRTSSSTRNDDNATHWSCEHCTYVNARSATICEMCHQRH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1184895 1191587 - CmaCh08G002110.1 Cma08g00211 298906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00211 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 216 IPR013083 -
Cma08g00211 586 SUPERFAMILY Ran binding protein zinc finger-like 558 584 IPR036443 -
Cma08g00211 586 MobiDBLite consensus disorder prediction 517 537 - -
Cma08g00211 586 Gene3D - 557 586 - -
Cma08g00211 586 SMART zf_4 561 585 IPR001876 -
Cma08g00211 586 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Cma08g00211 586 SMART ibrneu5 270 340 IPR002867 -
Cma08g00211 586 SMART ibrneu5 204 266 IPR002867 -
Cma08g00211 586 Gene3D - 262 517 - -
Cma08g00211 586 SUPERFAMILY RING/U-box 131 213 - -
Cma08g00211 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 534 IPR031127 GO:0004842|GO:0016567
Cma08g00211 586 MobiDBLite consensus disorder prediction 517 558 - -
Cma08g00211 586 CDD RING-HC_RBR_TRIAD1_like 135 185 - -
Cma08g00211 586 SUPERFAMILY RING/U-box 204 273 - -
Cma08g00211 586 Pfam IBR domain, a half RING-finger domain 283 331 IPR002867 -
Cma08g00211 586 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 -
Cma08g00211 586 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Cma08g00211 586 ProSiteProfiles Zinc finger RING-type profile. 135 182 IPR001841 -
Cma08g00211 586 Pfam Ariadne domain 353 519 IPR045840 -
Cma08g00211 586 Coils Coil 352 372 - -
Cma08g00211 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 534 - -
Cma08g00211 586 SUPERFAMILY RING/U-box 285 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00211 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1084.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00211 Cma-Chr8:1184895 Cma20g00867 Cma-Chr20:4161716 9.44E-61 dispersed
Cma12g00993 Cma-Chr12:7900408 Cma08g00211 Cma-Chr8:1184895 0 transposed
Cma17g00596 Cma-Chr17:4947053 Cma08g00211 Cma-Chr8:1184895 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00420 . 164 590 ARIADNE family AT4G34370 71.6 2.6e-182 635.6
Cma20g00867 . 164 589 ARIADNE family AT4G34370 71.8 2.2e-181 632.5
Cma02g00420 . 58 527 ARIADNE family AT2G16090 78.2 1.2e-223 773.1
Cma20g00867 . 58 542 ARIADNE family AT2G16090 76.8 2.3e-222 768.8
Cma20g00867 . 38 543 ARIADNE family AT3G27710 61.8 1.3e-183 640.2
Cma02g00420 . 36 522 ARIADNE family AT3G27710 62.4 8.7e-183 637.5
Cma02g00420 . 47 522 ARIADNE family AT3G27720 54.4 7.3e-144 508.1
Cma20g00867 . 44 522 ARIADNE family AT3G27720 53.6 8.9e-142 501.1
Cma12g00993 . 26 542 ARIADNE family AT1G05890 65.5 4.0e-221 765.0
Cma08g00211 . 56 524 ARIADNE family AT1G05890 73.6 1.3e-216 750.0
Cma17g00596 . 1 577 ARIADNE family AT1G05890 62.4 2.3e-213 739.2
Cma12g00993 . 26 576 ARIADNE family AT1G65430 75.0 6.4e-253 870.5
Cma08g00211 . 16 583 ARIADNE family AT1G65430 69.7 2.1e-243 839.0
Cma17g00596 . 16 631 ARIADNE family AT1G65430 64.3 2.5e-236 815.5
Cma12g00993 . 24 461 ARIADNE family AT2G31780 55.3 3.4e-148 522.3
Cma08g00211 . 53 449 ARIADNE family AT2G31780 57.6 1.5e-143 506.9
Cma17g00596 . 86 496 ARIADNE family AT2G31780 55.7 4.9e-139 491.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00211 Cma_Chr08 FPKM 27.088266 30.701986 26.280794 28.839701 16.497484 16.963606 14.668097 30.252996 30.184967 28.371622