Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00213 ATGGACCTGCAGCTCTTGTGGGTTGGCTTCTTTTTGTGCTGTGGGTTTTGGACTCTTGCTTTCAGCGATCAAGATGTTTTCCTAAGCTTATCTTGTGGAGGAACTACCACCTTCACTGACTCCTCCAACATTTCATGGATTCCGGACATCGACTACGTCAGCACCGGTAACACGTCAATCATCGACAATGGCGAGGGTGGATCTTTTTCCACCGGTCATGTTCGGTTCTTCCCCGACACCCGAGCGCGAAAATGTTACAAGCTACCATTGAAAAATGGCTCCTCATCAGTTCTTATCAGAGCTCAGTTTGTGTACAAAAACTATGACAAGCTTGGAAAGCCCCCTGCATTTGCTGTTTCTATTGGGACAGCCATAACTACCAATGTGAACCTTACTTCTCATGACCCTTGGACTGAGGAGTTTGTATGGCCAGTTAACAAAGAAACTGTCTCCTTCTGTTTGCATTCCATTCCTGAGGGTGGAAGTCCCTTGATATCTTCGCTCGAACTCCGACCGCTGCCACGGGGAGCGTACGACGATGGCTTGCTTCCTAATCAGGCTCTTAGAAAATCGTATCGAATCAATTGTGGTTACACTAATGGATCTCTCAGGTACCCAATCGATCGATACGATCGAATCTGGGACGCAGACGAGAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCTAACTTTGATTCTATACAAGTGAAGGAAGCTCCACCAGCTGTAGTAGTTGAAACAGCTAGAGTTTTGGCAAGAAGAGATGAGCTGAGCTACAACCTTCCACTTGAAGAACAAGGAGATTACTTTGTGATTTTGTATTTTGGTGGGATTCTTGCAGTTCATCCTTCATTTGATGTGTTGATGAATGGGAAAGTTATAGAATCAAATTACACTGTTGAAATGGGAGAGATGAGGGCTTTGTATGTCATTCAAGAGCAAATCAAGAGCTTGATTATCACTTTCAAGAGTGTTAAATTCTATCCTCAAGTCAATGCCATTGAGGTATATCAAATTGTTCATGTTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTCAGGTGATTCATCAATCTATTGGTTTGAATTTGGGATGGGAGGATGATCCATGCTCTCCAAGAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTCACATCTCTGGAGCTTTCCGATATCAACTTCAGGTCGATCAGCCCGACGTTTGGCGACATTCTTGATCTCAAAATACTGGATTTGCACAACACTTCACTTACCGGGCAGATAGAAAATTTGGGCAGCCTGACCCATCTTGAAAATTTGAACTTGAGTTTCAACAAGCTAACGTCATTTGGGACAGATTTCGAGAACCTAAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCACTTATTAAATTTGGAGAACAATAGGCTAGAAGGCACCCTTCCATTGGCTTTGAACAAAGGAACTCTGGAAATTAGAACATCAGGAAACCCTTGCCTGTCTTTCTCCACAATGACATGCAATGATGTTTCATTAAACCCTACCATTGAAACGCCACAAGTCACAGTGGTTCCCGACAGAAAGAAGGATATGAGCAGCCACAATAGCAACAATCATATGCCAATCACTATCATTGCTTGTGCAGTTGCAGCAGTTTTGCTAGTCCTCATCACACTCTCTCTTTCATTTCTACTCTACATGAGGAAGCATTCTCAATACACAGCTCAACCCACATACTCAACGAAGGCAGCAATGGAGCTAAGGAATTGGAACGCTGCAAAAGTATTCTCATACAAGGAGATAAAGGCAGCTACAAACAACTTCAAGGAAGTGATTGGCAGAGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCCTGAGGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAAGCCAACTTGGGGCTGATTCCTTTATCAATGAGGTTCATCTCCTGTCTCAAATTCGTCATCAAAATCTCGTTTGTTTGGAAGGATTTTGTAACGAATCGAAACGACAAATACTTGTTTACGAGTATTTACCGGGTGGATCCTTGGCTGATCACATCTATGGCAAGAACAAAAAAAGTGTCTCACTCAGCTGGATTAGAAGACTCAAAGTAGCTGTTGATGCAGCAAAAGGGTTGGACTATTTACACAATGGAAGTGAACCAAGGATAATCCACCGTGATGTTAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGGCTGTCCAAGCAACTACCACAGCCTGATGCTACTCATGTCACCACTGTTGTCAAGGGCACCGCTGGTTATTTGGATCCCGAGTATTACTCAACTCAACAGTTAACCGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTTTTATTAGAGCTCATTTGTGGACGAGAGCCTCTAAGTCACACTGGAAATCCGGATTCTTTCAATTTAGTGTTATGGGCGAAACCGTACTTGCAAGCGGGTGCGTTTGAGATAGTCGATGAGAGGTTGAGGGGAAGGTTTGATGTCGAAAGCATGAAAAAGGCAGCTCTTATTGCTATAAGGTGTGTAGAGAGAGATGCTTCACTAAGGCCTAATATTGGACAAGTCTTGGATGACCTTACACAAGCTTATGATGCTCAAATTGCTTATCTTTCTACTTTTGGCCTTTGA 2733 42.81 MDLQLLWVGFFLCCGFWTLAFSDQDVFLSLSCGGTTTFTDSSNISWIPDIDYVSTGNTSIIDNGEGGSFSTGHVRFFPDTRARKCYKLPLKNGSSSVLIRAQFVYKNYDKLGKPPAFAVSIGTAITTNVNLTSHDPWTEEFVWPVNKETVSFCLHSIPEGGSPLISSLELRPLPRGAYDDGLLPNQALRKSYRINCGYTNGSLRYPIDRYDRIWDADENFKPFHVSSGFKVEANFDSIQVKEAPPAVVVETARVLARRDELSYNLPLEEQGDYFVILYFGGILAVHPSFDVLMNGKVIESNYTVEMGEMRALYVIQEQIKSLIITFKSVKFYPQVNAIEVYQIVHVPLEASSTTVSALQVIHQSIGLNLGWEDDPCSPRTWDHVGCEGNLVTSLELSDINFRSISPTFGDILDLKILDLHNTSLTGQIENLGSLTHLENLNLSFNKLTSFGTDFENLSNLKILDLQNNSLQGIVPDSLGELEDLHLLNLENNRLEGTLPLALNKGTLEIRTSGNPCLSFSTMTCNDVSLNPTIETPQVTVVPDRKKDMSSHNSNNHMPITIIACAVAAVLLVLITLSLSFLLYMRKHSQYTAQPTYSTKAAMELRNWNAAKVFSYKEIKAATNNFKEVIGRGSFGSVYLGKLPEGKLVAVKVRFDKSQLGADSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGKNKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQLPQPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHTGNPDSFNLVLWAKPYLQAGAFEIVDERLRGRFDVESMKKAALIAIRCVERDASLRPNIGQVLDDLTQAYDAQIAYLSTFGL 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1193387 1203685 + CmaCh08G002130.1 Cma08g00213 298908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00213 910 ProSiteProfiles Leucine-rich repeat profile. 436 458 IPR001611 GO:0005515
Cma08g00213 910 Gene3D Phosphorylase Kinase; domain 1 596 698 - -
Cma08g00213 910 SMART serkin_6 623 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00213 910 SUPERFAMILY Protein kinase-like (PK-like) 597 894 IPR011009 -
Cma08g00213 910 Gene3D - 189 344 - -
Cma08g00213 910 CDD STKc_IRAK 629 896 - -
Cma08g00213 910 Gene3D Ribonuclease Inhibitor 355 508 IPR032675 -
Cma08g00213 910 SMART LRR_typ_2 457 480 IPR003591 -
Cma08g00213 910 SMART LRR_typ_2 434 456 IPR003591 -
Cma08g00213 910 SMART LRR_typ_2 481 505 IPR003591 -
Cma08g00213 910 SUPERFAMILY L domain-like 356 504 - -
Cma08g00213 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Cma08g00213 910 PANTHER OS07G0107800 PROTEIN-RELATED 10 909 - -
Cma08g00213 910 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524
Cma08g00213 910 Pfam Protein kinase domain 626 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00213 910 ProSiteProfiles Protein kinase domain profile. 623 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00213 910 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515
Cma08g00213 910 Pfam Malectin-like domain 30 343 IPR024788 -
Cma08g00213 910 Gene3D Transferase(Phosphotransferase) domain 1 699 905 - -
Cma08g00213 910 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 909 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00213 Cma-Chr8:1193387 Cma18g00724 Cma-Chr18:6549239 2.67E-131 dispersed
Cma11g00949 Cma-Chr11:5004569 Cma08g00213 Cma-Chr8:1193387 5.06E-18 dispersed
Cma08g00213 Cma-Chr8:1193387 Cma14g00188 Cma-Chr14:792274 3.91E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68744 PF12819 Malectin_like 2.70E-53 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00213 - - csv:101203637 1544.64