Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00225 ATGGCGCAGCGGCCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGACAACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCACGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAGACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGCTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCGGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAAAAACCCAAAAGCCGACAACAGCGCCAAGATTGGGCTCTGTGTTATGATCTATGGGCTTTTACTGTGGGCTCTATTTATAGACTGCGTGGGCTTTTACTGTGCAGACTGGGCTCTGTTTATGAACTGGATTATGGTGAGGGAACAACGAGTTGAATCGTTTTATGCTAAACTTCGTGAATCTGTGACGGCTTCTTCTTTGTCTCCTCTCCTTATTTTTCCTTCCACTTCTGATGTTGACTCGCTCTGTGCCTTGAAAATTATTTTTCAAGTTCTTGAATCTGATTCGATTCGATACGCTTGTTATCCCGTGTCTTCTTTTCAAGAAATCCATAAACATGCTGGTCCTAGTTTGAGTTCGTCATCTGCCGATCCGATTTCGATCCTCTTGATTAATTGGGGATGCCATCGAGATCTTAGGAAGGTTTTGAGTTTAGGTCCGGCTGCTCATGTGTTCGTTGTTGATAGTCATCGTCCAATTCATCTTCATAATCTGAGCGATCAGAATGAGCAAGTGGTTGTTCTTTACACGAAAGACGACGAGCTCCAGGCTGACTTAGCTTATGATTTTGATGTCTCTGCATTGGCGAATGCGAGCGATTTGAACAGCGATGATGAGATTGATGAGGAATTGGATAGTGACGATGATAATGATAGCGAAAGTGACGAAGAAGATCGAGGTGGATCGAGGAAACGGAGGAGAGTTGATAAGGAAAATGAGGATGATCCTGTTCAGATTTTCAGGAAATTGAAAAGAGGATACTATTATATGGGTACCTTCCATGGTAGGCCTTCAGGGTGTTTGATGTATGATCTGTCTCATTCATTGAGGAAGAACACAAACGAATTATTATGGCTGGCTTGTGTGTCGTTAACTGATCAGTTTGTTCATGAAAGATTAACGGATGAGAGGTACCAAGCTGGGGTTATGGAGCTTGAACAACACATAAACGGTTCAGGGAACTTGAATGCTGTAAACTCTGTTACACTTAAGGATGGCACCAAGATCCGAGCTCCTGAGGCATCAAGAATCACTTATGATGATGAACCAAGATTAATGCTCTTGCAGGAGTGGAGTTTGTTTGATTCAATGCTGTGTTCTTCATACATTGCTACCAAGTTAAAGACATGGAGTGACAATGGAATGAAGAAGCTCAAATTGCTTCTAGCACGCATGGGGTTTGCTCTTGTGGATTGCCAACAAAAGTTCCAATACATGAATCTCGAAGTGAAACGAAAAATGAAGGACGAATTCGAGCGATACCTGCCCGAATACGGCCTAAACGATTTCTACTACAGAAGTTTCTTGAGGTTACATGGTTATAGCTCAAAAGTGTCAGCAGCAGATGTGGTATATGGGGTCACTGCATTGCTTGAGTCCTTTGTGAAATCAGATGGGTCTAGTGCTTCCAAGAAGTTTGGAGTGGCTTATGATGCATTGTCATTGAGCAATCTTGATAAGCTCAAGGATGGAATGCAGCAGGCGATCAAGGTCCAGAGGTCAGTTCTTAGACAGGGGAGCTCTGCAATTACAAAGAGTGGTTGTATAAGAAGTGGGAGGAAGTTTCGTTGGGTGAAGCTTGAAGATTCTGTGGACACCAAATTTCTGGGCTATCCTCAAGCACTCACTAAGTTCTGCTACTTCATAATGGATGCTTTGCGAGAGAAAGGAGCTAGAATGAAGCCATTGCTATGTGCTTGTGTGTCTCAAGAGCTGAACAAAGTATTGATCATTGGTGTTTGCGGGAAGCCTCGGCTTGGGGCGTTTCGAGGCAATGCATTTGGGAGAGCGTTTCGAAACGCTGCGGAGGAAATCAGCGCGGAGTTTTTCCACGAGATGTTTGAATCCTCGTGGATTCTTCTTGATGCAACTTCAGTTAACTCATTCATGGTCAGATTGACTGAGAAGCTCTAA 2493 46.57 MAQRPHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAADNTPKKDDSPAPAPIPTTHERRQSREYGSSPAHRENPSRRQSGTEYSIDRSPLHRQAKPSGRESPMVENKGSDGGYGNRGKSRTKPLQAEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSSPYNNLKNPKADNSAKIGLCVMIYGLLLWALFIDCVGFYCADWALFMNWIMVREQRVESFYAKLRESVTASSLSPLLIFPSTSDVDSLCALKIIFQVLESDSIRYACYPVSSFQEIHKHAGPSLSSSSADPISILLINWGCHRDLRKVLSLGPAAHVFVVDSHRPIHLHNLSDQNEQVVVLYTKDDELQADLAYDFDVSALANASDLNSDDEIDEELDSDDDNDSESDEEDRGGSRKRRRVDKENEDDPVQIFRKLKRGYYYMGTFHGRPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINGSGNLNAVNSVTLKDGTKIRAPEASRITYDDEPRLMLLQEWSLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERYLPEYGLNDFYYRSFLRLHGYSSKVSAADVVYGVTALLESFVKSDGSSASKKFGVAYDALSLSNLDKLKDGMQQAIKVQRSVLRQGSSAITKSGCIRSGRKFRWVKLEDSVDTKFLGYPQALTKFCYFIMDALREKGARMKPLLCACVSQELNKVLIIGVCGKPRLGAFRGNAFGRAFRNAAEEISAEFFHEMFESSWILLDATSVNSFMVRLTEKL 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1262409 1266668 + CmaCh08G002250.1 Cma08g00225 298920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00225 830 MobiDBLite consensus disorder prediction 416 432 - -
Cma08g00225 830 MobiDBLite consensus disorder prediction 172 194 - -
Cma08g00225 830 MobiDBLite consensus disorder prediction 86 101 - -
Cma08g00225 830 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 141 175 IPR008700 -
Cma08g00225 830 MobiDBLite consensus disorder prediction 71 85 - -
Cma08g00225 830 Pfam CDC45-like protein 264 829 IPR003874 GO:0006270
Cma08g00225 830 PANTHER CDC45-RELATED PROTEIN 238 830 IPR003874 GO:0006270
Cma08g00225 830 PANTHER - 238 830 - -
Cma08g00225 830 MobiDBLite consensus disorder prediction 27 139 - -
Cma08g00225 830 MobiDBLite consensus disorder prediction 396 415 - -
Cma08g00225 830 MobiDBLite consensus disorder prediction 396 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00225 Cma-Chr8:1262409 Cma18g00585 Cma-Chr18:4049110 2.27E-17 dispersed
Cma14g01903 Cma-Chr14:13450033 Cma08g00225 Cma-Chr8:1262409 8.47E-07 dispersed
Cma17g01271 Cma-Chr17:8622062 Cma08g00225 Cma-Chr8:1262409 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00225 K06628 - csv:101221761 1053.89