Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00240 ATGATCGTTGATGATGTGAAGAAAGATCATAACGCTGAGCAGATTCCTGATTTGGATTTTCAGAAATTGGAAGTCGTAACGGCGCTCGGCCGAGGAGCGAAAGGAGTCGTGTTCTTGGCTCGAACTGCGAACGATGACGGCGGCGACGGCGAATGGCTGGCGTTGAAGGTGATTTCTAGAGATTTGATCGAGAGGAAGGCCAAGACTGTGAATAGCGATGCCGATGAGTATCGCAGAGTTTGCTTTGAACGAGAAGTTCTACGTCAGTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTGGATACGAAGAAAGTTGTTGGTTACGCCATTGATTATTGCAATGGACGAGATCTTAATACTCTCAGGAAGAAACAGACCGAGAAAATGTTCTCCGATGACGTTATTAGATTTTACGCGGCGGAATTAGTTATGGCGTTGGAGTATGTTCACAGCCTTGGAATAGTTTACAGAGATTTAAAGCCGGACAACGTTATGGTTCAACATAACGGCCACATAATGCTTGTAGATTTTGATCTCTCTACGAGGCTCTCTCAGAAATCTCCTAAATCGTCTCCGTTATTGTTGCCGTCGGTGGAGGTTTTGACGGAATCTAGATCGACGATTAAGAAAAAAAGCAAGAAAAGATTCTTTCATTTTCACCGATTCTGCAACTCCGGCGTGTCGCCGGAAGATTCAGACCAACAGACGGCCAATAAGCAAAAATCTCGGCCGGAGGGGCGAAAATCGCCGCCAGATTCGTCGGAATCCGACTCATCGGAGAAGTCGAACTCGTTCGTCGGAACAGAGGAGTACGTGGCGCCGGAGATAGTCTCCGGGAAGGGGCATGACTTCGCCGTGGACTGGTGGTCGCTCGGAGTAGTTCTGTACGAGATGCTATACGGAACGACGCCGTTTAGAGGATCGAATCGGAAGGAAACGTTCTACCGTATACTGACAAAGACGCCGGATCTCAGCGGCGAAGTAACACCGTTAAGGGATTTGATAAGGAGGTTGCTGGAGAAAGATCCAACGAGGAGGATCGAACTGGAGGAAATCAAGAGCCACAATTTCTTTAAAGGAACTGGCTGGGATTTGGTCCTGGAAATTCCCCGGCCGCCGTCGCTGCCGGCAATAGCGACGGAGGAAACAGATGGAAATAACTTAATTGATGTTGAGTCTTTCGTCCAAGATATATTTTGCAGCGAAACGGAGAAGAAGAATCGTACGAACGGCGATGAAGAGAAAGGGTTTCTTCCTACTAATTACACGGAGTCTGACAGATTTCATGTGTTCTGA 1302 47.77 MIVDDVKKDHNAEQIPDLDFQKLEVVTALGRGAKGVVFLARTANDDGGDGEWLALKVISRDLIERKAKTVNSDADEYRRVCFEREVLRQFRHPLLPRLRGVLDTKKVVGYAIDYCNGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPDNVMVQHNGHIMLVDFDLSTRLSQKSPKSSPLLLPSVEVLTESRSTIKKKSKKRFFHFHRFCNSGVSPEDSDQQTANKQKSRPEGRKSPPDSSESDSSEKSNSFVGTEEYVAPEIVSGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKTPDLSGEVTPLRDLIRRLLEKDPTRRIELEEIKSHNFFKGTGWDLVLEIPRPPSLPAIATEETDGNNLIDVESFVQDIFCSETEKKNRTNGDEEKGFLPTNYTESDRFHVF 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1334804 1336324 - CmaCh08G002400.1 Cma08g00240 298935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00240 433 ProSiteProfiles Protein kinase domain profile. 23 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00240 433 MobiDBLite consensus disorder prediction 229 267 - -
Cma08g00240 433 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 13 413 - -
Cma08g00240 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cma08g00240 433 PANTHER FLIPPASE KINASE 1-RELATED 13 413 - -
Cma08g00240 433 MobiDBLite consensus disorder prediction 238 257 - -
Cma08g00240 433 Pfam Protein kinase domain 24 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00240 433 Pfam Protein kinase domain 258 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00240 433 Gene3D Transferase(Phosphotransferase) domain 1 119 189 - -
Cma08g00240 433 Gene3D Transferase(Phosphotransferase) domain 1 257 379 - -
Cma08g00240 433 Gene3D Phosphorylase Kinase; domain 1 23 118 - -
Cma08g00240 433 SUPERFAMILY Protein kinase-like (PK-like) 22 396 IPR011009 -
Cma08g00240 433 SMART serkin_6 23 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01235 Cma-Chr2:7272237 Cma08g00240 Cma-Chr8:1334804 8.16E-87 dispersed
Cma08g00240 Cma-Chr8:1334804 Cma03g01169 Cma-Chr3:7831679 1.24E-71 dispersed
Cma08g00240 Cma-Chr8:1334804 Cma20g00071 Cma-Chr20:311465 4.60E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68745 PF00069 Pkinase 2.10E-29 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00240 K20714 - csv:101223223 612.068