Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00243 ATGGAGAACGAATTCTTCCTCAATGCTACTGAGATCCCTCAATCTCTTATGCATTTCGACTCCAATCCTTCCATGGCGACCTGGCACCACTCCTTTTCGTCCGCCATGGATGTTCAACCTCAACAACTTCAGCTTCATGTTCCTGAGTTCAATAATCACTGTTCTTCCTCTCATCCTTCGCCTCCGGATTGCTATCTCAATCCAGTTCCTCAACAGAGCTTCCAATTCGATTCCGCTCTGAGTTCCATGGTTTCTTCTCCAGCGCCCTCCAATTCCAACCCTACCAACGATAGCTTTGTGATCAGAGAACTGATCGGAAAATTAGGCGCAAATTCCGGGAGGAGAATCTCGGAATTGAACTCTTCTTCTTCTTCTTCCAGTGTGGCGGAGTTTTCGTCCGATCCTGGATTCGCTGAGCGTGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGACGTCAGTTGACGAATGAATTCGGTAATTTCAGATCTAACCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAAGCCCTCGGATCTGAAACGAAGTTGCAAGAACAGAAGAACAATTCCTCGTCGCAAGAAGACGAATCGTCTCTCTCGAATCCGGATAAGGCGATTTCGAATCCACGGAAGAGAAAGGCAATTTCGAAGGCGAAACTCAAAGAGCCGAATGCTGAAACTCCCGAGAAGGGAAGCCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGTGAAAACAGAAGAGGATTCGAAGAAAACCGATGCAGATTTAGCCGAAGAGAAGCAACAAAAAACGAACACGAATCCTCCCGAGCCTCCAAAAGATTACATTCATGTCCGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTCAGAAGAGAGAAAATCAGTGAACGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTTGATGAGATTATCAACTATGTGCAGTCATTGCAACACCAAGTTGAGTTTCTATCCATGAAGTTAGCATCTGTGAATACAACCAGAGTGGATTTCAACATGGATTCTCTGATCTTAAAACAAACGTACCAATCAGCCACCAGTTTGCCACATCCTATAGATTCCTCAGCTTCAAGCTATTATGGGCACCACCACCACCAAAAGCCCTCTCTCCCAGCCACCTCCATGGACCCTCTCGACTCTGTTTCATGTCAAAATCTTCCAATTCAACTCCCTCCTCTCAGTTCCTTTCCTCTAAATCCCTCTCAGTATCCAAACTTTGGGGAGGAGGATGAGCTTCTAAGCATTGTTCATATGGGATTCGTCCAGAATCAGGCCCAAGGCAAAAACTATGATTGCAATCTCACAGCTTCTTCAACATAG 1428 46.01 MENEFFLNATEIPQSLMHFDSNPSMATWHHSFSSAMDVQPQQLQLHVPEFNNHCSSSHPSPPDCYLNPVPQQSFQFDSALSSMVSSPAPSNSNPTNDSFVIRELIGKLGANSGRRISELNSSSSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFGNFRSNLSIANEKLSRVSSSPSLKALGSETKLQEQKNNSSSQEDESSLSNPDKAISNPRKRKAISKAKLKEPNAETPEKGSPKKIKAVETKENVKTEEDSKKTDADLAEEKQQKTNTNPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLILKQTYQSATSLPHPIDSSASSYYGHHHHQKPSLPATSMDPLDSVSCQNLPIQLPPLSSFPLNPSQYPNFGEEDELLSIVHMGFVQNQAQGKNYDCNLTASST 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1373639 1375937 + CmaCh08G002430.1 Cma08g00243 298938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00243 475 SMART finulus 302 352 IPR011598 GO:0046983
Cma08g00243 475 Gene3D - 293 365 IPR036638 GO:0046983
Cma08g00243 475 MobiDBLite consensus disorder prediction 175 215 - -
Cma08g00243 475 PANTHER - 58 113 - -
Cma08g00243 475 PANTHER - 125 460 - -
Cma08g00243 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Cma08g00243 475 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 125 460 IPR024097 GO:0006355
Cma08g00243 475 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 113 IPR024097 GO:0006355
Cma08g00243 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 361 IPR036638 GO:0046983
Cma08g00243 475 MobiDBLite consensus disorder prediction 175 287 - -
Cma08g00243 475 MobiDBLite consensus disorder prediction 228 272 - -
Cma08g00243 475 MobiDBLite consensus disorder prediction 392 412 - -
Cma08g00243 475 CDD bHLH_AtBPE_like 286 372 - -
Cma08g00243 475 Pfam Helix-loop-helix DNA-binding domain 300 347 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01607 Cma-Chr6:10016680 Cma08g00243 Cma-Chr8:1373639 3.60E-83 dispersed
Cma08g00243 Cma-Chr8:1373639 Cma14g01524 Cma-Chr14:11539744 9.27E-82 dispersed
Cma10g00029 Cma-Chr10:106370 Cma08g00243 Cma-Chr8:1373639 1.56E-43 dispersed
Cma13g00828 Cma-Chr13:6927496 Cma08g00243 Cma-Chr8:1373639 3.89E-46 dispersed
Cma17g01213 Cma-Chr17:8381348 Cma08g00243 Cma-Chr8:1373639 4.25E-22 dispersed
Cma17g01290 Cma-Chr17:8705244 Cma08g00243 Cma-Chr8:1373639 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35478 PF00010 HLH 3.60E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00243 - - csv:101204984 654.44