Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00243 | ATGGAGAACGAATTCTTCCTCAATGCTACTGAGATCCCTCAATCTCTTATGCATTTCGACTCCAATCCTTCCATGGCGACCTGGCACCACTCCTTTTCGTCCGCCATGGATGTTCAACCTCAACAACTTCAGCTTCATGTTCCTGAGTTCAATAATCACTGTTCTTCCTCTCATCCTTCGCCTCCGGATTGCTATCTCAATCCAGTTCCTCAACAGAGCTTCCAATTCGATTCCGCTCTGAGTTCCATGGTTTCTTCTCCAGCGCCCTCCAATTCCAACCCTACCAACGATAGCTTTGTGATCAGAGAACTGATCGGAAAATTAGGCGCAAATTCCGGGAGGAGAATCTCGGAATTGAACTCTTCTTCTTCTTCTTCCAGTGTGGCGGAGTTTTCGTCCGATCCTGGATTCGCTGAGCGTGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGACGTCAGTTGACGAATGAATTCGGTAATTTCAGATCTAACCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAAGCCCTCGGATCTGAAACGAAGTTGCAAGAACAGAAGAACAATTCCTCGTCGCAAGAAGACGAATCGTCTCTCTCGAATCCGGATAAGGCGATTTCGAATCCACGGAAGAGAAAGGCAATTTCGAAGGCGAAACTCAAAGAGCCGAATGCTGAAACTCCCGAGAAGGGAAGCCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGTGAAAACAGAAGAGGATTCGAAGAAAACCGATGCAGATTTAGCCGAAGAGAAGCAACAAAAAACGAACACGAATCCTCCCGAGCCTCCAAAAGATTACATTCATGTCCGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTCAGAAGAGAGAAAATCAGTGAACGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTTGATGAGATTATCAACTATGTGCAGTCATTGCAACACCAAGTTGAGTTTCTATCCATGAAGTTAGCATCTGTGAATACAACCAGAGTGGATTTCAACATGGATTCTCTGATCTTAAAACAAACGTACCAATCAGCCACCAGTTTGCCACATCCTATAGATTCCTCAGCTTCAAGCTATTATGGGCACCACCACCACCAAAAGCCCTCTCTCCCAGCCACCTCCATGGACCCTCTCGACTCTGTTTCATGTCAAAATCTTCCAATTCAACTCCCTCCTCTCAGTTCCTTTCCTCTAAATCCCTCTCAGTATCCAAACTTTGGGGAGGAGGATGAGCTTCTAAGCATTGTTCATATGGGATTCGTCCAGAATCAGGCCCAAGGCAAAAACTATGATTGCAATCTCACAGCTTCTTCAACATAG | 1428 | 46.01 | MENEFFLNATEIPQSLMHFDSNPSMATWHHSFSSAMDVQPQQLQLHVPEFNNHCSSSHPSPPDCYLNPVPQQSFQFDSALSSMVSSPAPSNSNPTNDSFVIRELIGKLGANSGRRISELNSSSSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFGNFRSNLSIANEKLSRVSSSPSLKALGSETKLQEQKNNSSSQEDESSLSNPDKAISNPRKRKAISKAKLKEPNAETPEKGSPKKIKAVETKENVKTEEDSKKTDADLAEEKQQKTNTNPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLILKQTYQSATSLPHPIDSSASSYYGHHHHQKPSLPATSMDPLDSVSCQNLPIQLPPLSSFPLNPSQYPNFGEEDELLSIVHMGFVQNQAQGKNYDCNLTASST | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1373639 | 1375937 | + | CmaCh08G002430.1 | Cma08g00243 | 298938 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00243 | 475 | SMART | finulus | 302 | 352 | IPR011598 | GO:0046983 | |
Cma08g00243 | 475 | Gene3D | - | 293 | 365 | IPR036638 | GO:0046983 | |
Cma08g00243 | 475 | MobiDBLite | consensus disorder prediction | 175 | 215 | - | - | |
Cma08g00243 | 475 | PANTHER | - | 58 | 113 | - | - | |
Cma08g00243 | 475 | PANTHER | - | 125 | 460 | - | - | |
Cma08g00243 | 475 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 296 | 346 | IPR011598 | GO:0046983 | |
Cma08g00243 | 475 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 125 | 460 | IPR024097 | GO:0006355 | |
Cma08g00243 | 475 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 58 | 113 | IPR024097 | GO:0006355 | |
Cma08g00243 | 475 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 294 | 361 | IPR036638 | GO:0046983 | |
Cma08g00243 | 475 | MobiDBLite | consensus disorder prediction | 175 | 287 | - | - | |
Cma08g00243 | 475 | MobiDBLite | consensus disorder prediction | 228 | 272 | - | - | |
Cma08g00243 | 475 | MobiDBLite | consensus disorder prediction | 392 | 412 | - | - | |
Cma08g00243 | 475 | CDD | bHLH_AtBPE_like | 286 | 372 | - | - | |
Cma08g00243 | 475 | Pfam | Helix-loop-helix DNA-binding domain | 300 | 347 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01607 | Cma-Chr6:10016680 | Cma08g00243 | Cma-Chr8:1373639 | 3.60E-83 | dispersed | |
Cma08g00243 | Cma-Chr8:1373639 | Cma14g01524 | Cma-Chr14:11539744 | 9.27E-82 | dispersed | |
Cma10g00029 | Cma-Chr10:106370 | Cma08g00243 | Cma-Chr8:1373639 | 1.56E-43 | dispersed | |
Cma13g00828 | Cma-Chr13:6927496 | Cma08g00243 | Cma-Chr8:1373639 | 3.89E-46 | dispersed | |
Cma17g01213 | Cma-Chr17:8381348 | Cma08g00243 | Cma-Chr8:1373639 | 4.25E-22 | dispersed | |
Cma17g01290 | Cma-Chr17:8705244 | Cma08g00243 | Cma-Chr8:1373639 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35478 | PF00010 | HLH | 3.60E-06 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00243 | - | - | csv:101204984 | 654.44 |