Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00245 ATGTCTCGAACACCGAATTTTGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAAAAGGAACACGACGAACTCCGACTGGAAAAGTCCGGCAACTTCCCGACCTCACCTGCATTTCTATCTCTTGAGATCCGGAGTTCTGGGAGTCCTGGAGATCGAACGGCCGATAAGGACCGGGCGAGAACGAGGAGTGCCCGCCAGATTTCTTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCTTTGGCTTCAATCACCAATGGGTTCGTTCATCTTATCCGCACTGCCAATCGTCGGATTGCATCGCCTGATTCTCCAGCTGATTCGGCCTCGTCTCGGCTCTATAAGATAATCAAAGTGTTTTTGATTGTGGTGCTTCTGTTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAAACCCCCTAACGTGAGTTCCGCTTCTGCGGAGGTGCTTGGAATGATAGGGTTTGTGTATGCTAGTTGGCTTGAGATTCGGGAAAATTACTTGGCTCCACCGCTGCAGAGCTTGATCAATTTGTGCATTGTGTTATTCCTGTTCCAGTCAGTGGATCGTTTGGTTTTAATGATGGGGTGTTTTTGGATAAAATTCTGGGGATTGAAGCCCGTGGCGGCGTTTGAGTACTCGGACACTGATGAGAATGCTCCCGAGGATTATCCAATGGTGTTGGTGCAGATTCCCATGTGCAATGAGAGGGAGGTCTACCAGCAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAGAATACTTGTTCAGGTTTTAGATGATTCTGATGAACTAGATGTTCAACAACTTATCAATGCTGAAGTACAAAAATGGCAACAAAGAGGTGTCCACATATTGTATAGACACCGCCTCATGCGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCTATGGGGTGTGATTATGGGAATGATGAACTTGCATTGGTCCAGACAAGGTGGTCATTTGTGAACAAGGACGAAAATTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGTGGAGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCAGTTCGTGCCCATCTTTGTGGCTGGAAGTTCATATTTCTTAATGATGTGAAGTGCCTTTGTGAACTTCCGGAATCATTTGAAGCGTACAAGAAACAACAACACCGATGGCATTCAGGCCCAATGCAGCTATTTCGTTTGTGCTTCGCTGATATACTCAAATCGAAGGTAAGTTGGAAGAAGAAAGCTAATTTGATCTTTCTTTTCTTCCTTTTGCGAAAGCTTATCCTTCCCTTTTACTCATTTACCTTGTTCTGCATAATTCTACCCCTTACCATGTTCCTTCCAGAGGCTCATCTACCAGCTTGGGTTGTTTGCTATGTTCCCGGAATGATGTCCATCTTAAACATTCTCCCTTCACCACAGTCGTTTCCTTTTATAGTCCCCTATCTTCTCTTTGAAAACACCATGTCTGTTACCAAATTCAATGCCATGATATTGGGATTATTCCGCTTTAAAAGTTCGTACAAATGGATAGTAACAAAAAAACTAGGAAGATCATCCGAAAACGATCTTGTTGCTTTTGAAAAAGAACAAGAATTTTTGGTTGAAGGTTCTACTAGTCTTCATCGGTCATCCTCGGAATCAGGTCTTCTAGACCTAACCAAGCTCGAGATATCGAAAAAAACAGGGAAATGCAAAAGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCATTCATTTTGTTAACAGCCTCCGTCAGAAGTTTGTTATCTGCACAAGGAATTCACTTCTACTTCCTATTATTTCAAGGTATCACTTTGCTAGTGGTGGGTCTCGATTTAATTGGAGAGCAGGTGAGCTAA 1995 43.31 MSRTPNFEFQEWWNKQREKEHDELRLEKSGNFPTSPAFLSLEIRSSGSPGDRTADKDRARTRSARQISWVWLLKFQQIAGSLASITNGFVHLIRTANRRIASPDSPADSASSRLYKIIKVFLIVVLLLLVFELVAYFNGWHFKPPNVSSASAEVLGMIGFVYASWLEIRENYLAPPLQSLINLCIVLFLFQSVDRLVLMMGCFWIKFWGLKPVAAFEYSDTDENAPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDRILVQVLDDSDELDVQQLINAEVQKWQQRGVHILYRHRLMRTGYKAGNLKSAMGCDYGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKCLCELPESFEAYKKQQHRWHSGPMQLFRLCFADILKSKVSWKKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFLPEAHLPAWVVCYVPGMMSILNILPSPQSFPFIVPYLLFENTMSVTKFNAMILGLFRFKSSYKWIVTKKLGRSSENDLVAFEKEQEFLVEGSTSLHRSSSESGLLDLTKLEISKKTGKCKRNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITLLVVGLDLIGEQVS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1381116 1388676 + CmaCh08G002450.1 Cma08g00245 298940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00245 664 Pfam Glycosyl transferase family group 2 321 501 IPR001173 -
Cma08g00245 664 SUPERFAMILY Nucleotide-diphospho-sugar transferases 225 473 IPR029044 -
Cma08g00245 664 PANTHER - 25 317 - -
Cma08g00245 664 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 316 IPR029044 -
Cma08g00245 664 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 317 417 IPR029044 -
Cma08g00245 664 PANTHER - 318 663 - -
Cma08g00245 664 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 318 663 - -
Cma08g00245 664 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 25 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00245 Cma-Chr8:1381116 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma17g01291 Cma-Chr17:8712558 Cma08g00245 Cma-Chr8:1381116 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00245 - - csv:101216681 1142.1