Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00245 ATGTCTCGAACACCGAATTTTGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAAAAGGAACACGACGAACTCCGACTGGAAAAGTCCGGCAACTTCCCGACCTCACCTGCATTTCTATCTCTTGAGATCCGGAGTTCTGGGAGTCCTGGAGATCGAACGGCCGATAAGGACCGGGCGAGAACGAGGAGTGCCCGCCAGATTTCTTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCTTTGGCTTCAATCACCAATGGGTTCGTTCATCTTATCCGCACTGCCAATCGTCGGATTGCATCGCCTGATTCTCCAGCTGATTCGGCCTCGTCTCGGCTCTATAAGATAATCAAAGTGTTTTTGATTGTGGTGCTTCTGTTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAAACCCCCTAACGTGAGTTCCGCTTCTGCGGAGGTGCTTGGAATGATAGGGTTTGTGTATGCTAGTTGGCTTGAGATTCGGGAAAATTACTTGGCTCCACCGCTGCAGAGCTTGATCAATTTGTGCATTGTGTTATTCCTGTTCCAGTCAGTGGATCGTTTGGTTTTAATGATGGGGTGTTTTTGGATAAAATTCTGGGGATTGAAGCCCGTGGCGGCGTTTGAGTACTCGGACACTGATGAGAATGCTCCCGAGGATTATCCAATGGTGTTGGTGCAGATTCCCATGTGCAATGAGAGGGAGGTCTACCAGCAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAGAATACTTGTTCAGGTTTTAGATGATTCTGATGAACTAGATGTTCAACAACTTATCAATGCTGAAGTACAAAAATGGCAACAAAGAGGTGTCCACATATTGTATAGACACCGCCTCATGCGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCTATGGGGTGTGATTATGGGAATGATGAACTTGCATTGGTCCAGACAAGGTGGTCATTTGTGAACAAGGACGAAAATTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGTGGAGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCAGTTCGTGCCCATCTTTGTGGCTGGAAGTTCATATTTCTTAATGATGTGAAGTGCCTTTGTGAACTTCCGGAATCATTTGAAGCGTACAAGAAACAACAACACCGATGGCATTCAGGCCCAATGCAGCTATTTCGTTTGTGCTTCGCTGATATACTCAAATCGAAGGTAAGTTGGAAGAAGAAAGCTAATTTGATCTTTCTTTTCTTCCTTTTGCGAAAGCTTATCCTTCCCTTTTACTCATTTACCTTGTTCTGCATAATTCTACCCCTTACCATGTTCCTTCCAGAGGCTCATCTACCAGCTTGGGTTGTTTGCTATGTTCCCGGAATGATGTCCATCTTAAACATTCTCCCTTCACCACAGTCGTTTCCTTTTATAGTCCCCTATCTTCTCTTTGAAAACACCATGTCTGTTACCAAATTCAATGCCATGATATTGGGATTATTCCGCTTTAAAAGTTCGTACAAATGGATAGTAACAAAAAAACTAGGAAGATCATCCGAAAACGATCTTGTTGCTTTTGAAAAAGAACAAGAATTTTTGGTTGAAGGTTCTACTAGTCTTCATCGGTCATCCTCGGAATCAGGTCTTCTAGACCTAACCAAGCTCGAGATATCGAAAAAAACAGGGAAATGCAAAAGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCATTCATTTTGTTAACAGCCTCCGTCAGAAGTTTGTTATCTGCACAAGGAATTCACTTCTACTTCCTATTATTTCAAGGTATCACTTTGCTAGTGGTGGGTCTCGATTTAATTGGAGAGCAGGTGAGCTAA 1995 43.31 MSRTPNFEFQEWWNKQREKEHDELRLEKSGNFPTSPAFLSLEIRSSGSPGDRTADKDRARTRSARQISWVWLLKFQQIAGSLASITNGFVHLIRTANRRIASPDSPADSASSRLYKIIKVFLIVVLLLLVFELVAYFNGWHFKPPNVSSASAEVLGMIGFVYASWLEIRENYLAPPLQSLINLCIVLFLFQSVDRLVLMMGCFWIKFWGLKPVAAFEYSDTDENAPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDRILVQVLDDSDELDVQQLINAEVQKWQQRGVHILYRHRLMRTGYKAGNLKSAMGCDYGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKCLCELPESFEAYKKQQHRWHSGPMQLFRLCFADILKSKVSWKKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFLPEAHLPAWVVCYVPGMMSILNILPSPQSFPFIVPYLLFENTMSVTKFNAMILGLFRFKSSYKWIVTKKLGRSSENDLVAFEKEQEFLVEGSTSLHRSSSESGLLDLTKLEISKKTGKCKRNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITLLVVGLDLIGEQVS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1381116 1388676 + CmaCh08G002450.1 Cma08g00245 298940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00245 664 Pfam Glycosyl transferase family group 2 321 501 IPR001173 -
Cma08g00245 664 SUPERFAMILY Nucleotide-diphospho-sugar transferases 225 473 IPR029044 -
Cma08g00245 664 PANTHER - 25 317 - -
Cma08g00245 664 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 316 IPR029044 -
Cma08g00245 664 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 317 417 IPR029044 -
Cma08g00245 664 PANTHER - 318 663 - -
Cma08g00245 664 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 318 663 - -
Cma08g00245 664 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 25 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00245 - - - csv:101216681 1142.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00245 Cma-Chr8:1381116 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma17g01291 Cma-Chr17:8712558 Cma08g00245 Cma-Chr8:1381116 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00430 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 8.2e-58 221.1
Cma20g00883 CST 176 338 REM Transcription Factor Family AT1G49480 69.9 1.2e-56 217.2
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma02g00430 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 8.2e-58 221.1
Cma20g00883 CST 176 338 REM Transcription Factor Family AT1G49480 69.9 1.2e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00245 Cma_Chr08 FPKM 5.937811 5.687949 6.794164 7.67419 11.41502 8.952767 12.829209 2.960884 3.48835 4.052711