Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00246 ATGGATGAGGATTTTGATATCCCTGCGGCGGCTGACATGAATGACGACTTGGATTTTCCTGATGAAACCGTTGCTCTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAGGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGAACTCCGTTCAAGTTCACTCTTGGCCAAGGACAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAGAAGAGTGAAAAAGCTCTTTTTACCATTCCTCCTGACTTGGCATACGGTGAATCTGGATCCCCACCAACCATTCCTCCTAGTGCTACATTGCAGTTTGATGTTGAGCTACTATCTTGGACAAGCGTCAAGGACATATGCAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGACAGAAATGGGAAAATCCAAAAGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTGGAAGATGGAACACTTGTTGCAAAAGCAGATGGAGTGGAATTCACCGTTGGGGATGGTTACTTTTGCCCTGCTCTTGCAAAGGCTGTAAAAACCATGAAGCTAGGTGAAAAGGCACTCCTCACGGTGAAACCACAATATGGGTTTGGGGAGAAGGGTAAACCAGCCTCTAGCAATGAAGGTGCAGTTCCGCCAAATGCATCTCTCGATATTACACTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACTCCTGACAAGAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGGTATGAGAAGCCAAACGATGGTACTGTCGTCAAAGTGAAATTGGTCGGGAAGTTGGGAGATGGCAAGATATTTTTGAAGAAAGGATATGGTGATGGTGAAGAGCCATTTGAGTTTAAAACAGATGAAGAACAAGTGATTGATGGCCTCGACAAAGCTGTGGCAACAATGAAGAAAGGTGAGAAAGCCCTGCTGACTATAGCACCTGAGTATGCTTTTGGTTCATCTGAGTCAAAACAGGAGTTAGCTGTAGTTCCTCCGAACTCGACTGTGTATTACGAAGTTGAACTAGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCTGGAAAATTTGCTAGAGCCTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAACACGATTCTTCCTTTAGCGAAGAAGAGAAAAAACAGGCTAAGGCATTGAAAGTTGCATGCAATTTGAACGATGCAGCTTGTAAATTGAAGCTAAAGCTGTACAAGGAGGCAGAGAAATTGTGCACCAAGGTTCTGGAACTCGAAAGTTCAAATGTTAAAGCTCTTTATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGATTTGGCCGAAGTTGACATCAAGAAAGCTCTTGAAATCGATCCAAATAACAGTTGA 1551 42.75 MDEDFDIPAAADMNDDLDFPDETVALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGQKWENPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKPASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGTVVKVKLVGKLGDGKIFLKKGYGDGEEPFEFKTDEEQVIDGLDKAVATMKKGEKALLTIAPEYAFGSSESKQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKAGKFARASKRYEKAVKFIEHDSSFSEEEKKQAKALKVACNLNDAACKLKLKLYKEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEVDIKKALEIDPNNS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1389187 1393065 - CmaCh08G002460.1 Cma08g00246 298941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00246 516 Gene3D - 148 261 IPR046357 GO:0003755
Cma08g00246 516 Gene3D - 28 147 IPR046357 GO:0003755
Cma08g00246 516 SUPERFAMILY FKBP-like 264 399 - -
Cma08g00246 516 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755
Cma08g00246 516 SMART tpr_5 448 481 IPR019734 GO:0005515
Cma08g00246 516 SMART tpr_5 482 515 IPR019734 GO:0005515
Cma08g00246 516 SMART tpr_5 399 432 IPR019734 GO:0005515
Cma08g00246 516 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Cma08g00246 516 SUPERFAMILY FKBP-like 148 264 - -
Cma08g00246 516 Pfam Tetratricopeptide repeat 482 515 IPR001440 GO:0005515
Cma08g00246 516 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 271 380 - -
Cma08g00246 516 PANTHER PEPTIDYLPROLYL ISOMERASE 1 268 - -
Cma08g00246 516 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Cma08g00246 516 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 381 515 - -
Cma08g00246 516 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 268 - -
Cma08g00246 516 Gene3D Tetratricopeptide repeat domain 385 516 IPR011990 GO:0005515
Cma08g00246 516 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 257 IPR001179 GO:0003755
Cma08g00246 516 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Cma08g00246 516 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 379 IPR001179 GO:0003755
Cma08g00246 516 SUPERFAMILY TPR-like 387 515 IPR011990 GO:0005515
Cma08g00246 516 Gene3D - 262 383 IPR046357 GO:0003755
Cma08g00246 516 PANTHER PEPTIDYLPROLYL ISOMERASE 381 515 - -
Cma08g00246 516 PANTHER PEPTIDYLPROLYL ISOMERASE 271 380 - -
Cma08g00246 516 SUPERFAMILY FKBP-like 32 153 - -
Cma08g00246 516 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00232 Cma-Chr1:1070234 Cma08g00246 Cma-Chr8:1389187 8.59E-09 dispersed
Cma08g00246 Cma-Chr8:1389187 Cma14g01527 Cma-Chr14:11556106 0 dispersed
Cma20g00275 Cma-Chr20:1338689 Cma08g00246 Cma-Chr8:1389187 2.41E-09 dispersed
Cma08g00246 Cma-Chr8:1389187 Cma08g00247 Cma-Chr8:1393847 1.84E-11 tandem
Cma19g00474 Cma-Chr19:5678432 Cma08g00246 Cma-Chr8:1389187 3.84E-10 transposed
Cma17g01292 Cma-Chr17:8717436 Cma08g00246 Cma-Chr8:1389187 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00246 K09571 - csv:101214513 934.095