Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00246 | ATGGATGAGGATTTTGATATCCCTGCGGCGGCTGACATGAATGACGACTTGGATTTTCCTGATGAAACCGTTGCTCTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAGGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGAACTCCGTTCAAGTTCACTCTTGGCCAAGGACAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAGAAGAGTGAAAAAGCTCTTTTTACCATTCCTCCTGACTTGGCATACGGTGAATCTGGATCCCCACCAACCATTCCTCCTAGTGCTACATTGCAGTTTGATGTTGAGCTACTATCTTGGACAAGCGTCAAGGACATATGCAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGACAGAAATGGGAAAATCCAAAAGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTGGAAGATGGAACACTTGTTGCAAAAGCAGATGGAGTGGAATTCACCGTTGGGGATGGTTACTTTTGCCCTGCTCTTGCAAAGGCTGTAAAAACCATGAAGCTAGGTGAAAAGGCACTCCTCACGGTGAAACCACAATATGGGTTTGGGGAGAAGGGTAAACCAGCCTCTAGCAATGAAGGTGCAGTTCCGCCAAATGCATCTCTCGATATTACACTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACTCCTGACAAGAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGGTATGAGAAGCCAAACGATGGTACTGTCGTCAAAGTGAAATTGGTCGGGAAGTTGGGAGATGGCAAGATATTTTTGAAGAAAGGATATGGTGATGGTGAAGAGCCATTTGAGTTTAAAACAGATGAAGAACAAGTGATTGATGGCCTCGACAAAGCTGTGGCAACAATGAAGAAAGGTGAGAAAGCCCTGCTGACTATAGCACCTGAGTATGCTTTTGGTTCATCTGAGTCAAAACAGGAGTTAGCTGTAGTTCCTCCGAACTCGACTGTGTATTACGAAGTTGAACTAGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCTGGAAAATTTGCTAGAGCCTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAACACGATTCTTCCTTTAGCGAAGAAGAGAAAAAACAGGCTAAGGCATTGAAAGTTGCATGCAATTTGAACGATGCAGCTTGTAAATTGAAGCTAAAGCTGTACAAGGAGGCAGAGAAATTGTGCACCAAGGTTCTGGAACTCGAAAGTTCAAATGTTAAAGCTCTTTATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGATTTGGCCGAAGTTGACATCAAGAAAGCTCTTGAAATCGATCCAAATAACAGTTGA | 1551 | 42.75 | MDEDFDIPAAADMNDDLDFPDETVALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGQKWENPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKPASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGTVVKVKLVGKLGDGKIFLKKGYGDGEEPFEFKTDEEQVIDGLDKAVATMKKGEKALLTIAPEYAFGSSESKQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKAGKFARASKRYEKAVKFIEHDSSFSEEEKKQAKALKVACNLNDAACKLKLKLYKEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEVDIKKALEIDPNNS | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1389187 | 1393065 | - | CmaCh08G002460.1 | Cma08g00246 | 298941 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00246 | 516 | Gene3D | - | 148 | 261 | IPR046357 | GO:0003755 | |
Cma08g00246 | 516 | Gene3D | - | 28 | 147 | IPR046357 | GO:0003755 | |
Cma08g00246 | 516 | SUPERFAMILY | FKBP-like | 264 | 399 | - | - | |
Cma08g00246 | 516 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 289 | 382 | IPR001179 | GO:0003755 | |
Cma08g00246 | 516 | SMART | tpr_5 | 448 | 481 | IPR019734 | GO:0005515 | |
Cma08g00246 | 516 | SMART | tpr_5 | 482 | 515 | IPR019734 | GO:0005515 | |
Cma08g00246 | 516 | SMART | tpr_5 | 399 | 432 | IPR019734 | GO:0005515 | |
Cma08g00246 | 516 | ProSiteProfiles | TPR repeat profile. | 482 | 515 | IPR019734 | GO:0005515 | |
Cma08g00246 | 516 | SUPERFAMILY | FKBP-like | 148 | 264 | - | - | |
Cma08g00246 | 516 | Pfam | Tetratricopeptide repeat | 482 | 515 | IPR001440 | GO:0005515 | |
Cma08g00246 | 516 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 271 | 380 | - | - | |
Cma08g00246 | 516 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 1 | 268 | - | - | |
Cma08g00246 | 516 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755 | |
Cma08g00246 | 516 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 381 | 515 | - | - | |
Cma08g00246 | 516 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 268 | - | - | |
Cma08g00246 | 516 | Gene3D | Tetratricopeptide repeat domain | 385 | 516 | IPR011990 | GO:0005515 | |
Cma08g00246 | 516 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 167 | 257 | IPR001179 | GO:0003755 | |
Cma08g00246 | 516 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 51 | 141 | IPR001179 | GO:0003755 | |
Cma08g00246 | 516 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 283 | 379 | IPR001179 | GO:0003755 | |
Cma08g00246 | 516 | SUPERFAMILY | TPR-like | 387 | 515 | IPR011990 | GO:0005515 | |
Cma08g00246 | 516 | Gene3D | - | 262 | 383 | IPR046357 | GO:0003755 | |
Cma08g00246 | 516 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 381 | 515 | - | - | |
Cma08g00246 | 516 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 271 | 380 | - | - | |
Cma08g00246 | 516 | SUPERFAMILY | FKBP-like | 32 | 153 | - | - | |
Cma08g00246 | 516 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 172 | 261 | IPR001179 | GO:0003755 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00232 | Cma-Chr1:1070234 | Cma08g00246 | Cma-Chr8:1389187 | 8.59E-09 | dispersed | |
Cma08g00246 | Cma-Chr8:1389187 | Cma14g01527 | Cma-Chr14:11556106 | 0 | dispersed | |
Cma20g00275 | Cma-Chr20:1338689 | Cma08g00246 | Cma-Chr8:1389187 | 2.41E-09 | dispersed | |
Cma08g00246 | Cma-Chr8:1389187 | Cma08g00247 | Cma-Chr8:1393847 | 1.84E-11 | tandem | |
Cma19g00474 | Cma-Chr19:5678432 | Cma08g00246 | Cma-Chr8:1389187 | 3.84E-10 | transposed | |
Cma17g01292 | Cma-Chr17:8717436 | Cma08g00246 | Cma-Chr8:1389187 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00246 | K09571 | - | csv:101214513 | 934.095 |