Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00269 ATGGACCAGTCGGCCAATATCGTTGTTGGTTCCCATATATGGGTGGGAGATTTAGAGTCCGTTTGGATTGATGGGGTCGTATTGAACATCACCGGGGAAGATGCTGAGATTCAAACTAGTGATGGAAGACAGGTGGTTGTAAAACTGTCAAATCTATATCTAAGGGATGCAGAAGCTCCTGCTACTGGAATTGATGATATGACTAGAATGTCATATTTGAATGAGCCAGGGTTGCTGCATAATTTGGCTACCAGATATGGAATAAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAATCCATTCCAAAGTATTGAAAAACTGTATGATGCCTGTGTGATGGAGCAGTACAAGGGAGCACCAATTGGGGAGCTGAAGCCTCATGTTTTTGCAATTGCTGATGTTGCATATAGGGCTATGATAAATTATGGGAAAAGCAACTCCATTCTAGTAAGTGGTGAAAGTGGGGCTGGTAAAACTGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGGACTGTTGAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTCGGCAATGCAAAAACAGTAAGAAACAACAATTCAAGCCGTTTTGGGAAATTTGTTGAGATCCAATTTGACAAGAATGGAAGAATATCAGGAGCTGCCATCCGAACATATCTTCTTGAGAGATCACGGGTTTGCCAAATATCAGACCCTGAGCGCAACTATCATTGCTTTTATCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAAATATAAGCTGGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGACTGGTGTGAATGATGCTCACGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATATGTGAACAGGAGCAGGATGCAATTTTCAGAGTTGTGGCTGCAATTCTTCATCTTGGTAATATTGACTTTGCAAAAGGAGAAGAGTCCGATTCATCATTTGTAAAAGATGAAGAATCAAAATTTCACCTTGACATGACAGCAGAGCTTCTCATGTGTGATCCCCAAGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCAGAGGACGTTATCAAGAAAAGTCTTGATCCGCTTGGTGCAACAGTCAGCAGGGATGGATTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTAGGTAAAATCAATGTTTCCATCGGGCAAGATCCTTGCTCTGAATATCTGATCGGTGTACTGGATATTTACGGTTTTGAGAGCTTTAAAAATAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTGTTCAAGATGGAGCAAGAAGAATATGTAAGAGAGGAAATTGATTGGAGCTACATAGAATTTGTTGATAATCAAGATGTCCTTGACCTCATTGAGAAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCATGCATACTCCCAAAATCAAATCATGAATCATTTGCACAAAAGCTGTATCAAATCTTCAAAAATCATAAACGCTTCATCAAGCCAAAATTGGCTCGCTCAGAATTTGCGATTGTTCATTATGCAGGAGATGTTCTATATCAGTCAGAACATTTTCTAGACAAAAATAAAGATTATGTTGTCCCTGAACATCAAGATTTGTTAAGTGCTTCAAAATGTTCTTTTGTTGCTGGTCTCTTCCCTCCTTTTCCTGAGGACATGGCCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAGCTACAGCAGTTGATGGAAACATTAAATTCGACAGAACCCCATTATATAAGATGCGTGAAGCCCAATACTGTCCTGCAACCTGCCATATTTGAGAATGCGACTGTTATGCAACAATTACGTTCTGGTGGTGTTCTGGAGGCAGTTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTTGGAGTTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGTAGCATGCGGAAAGATTCTAGAGAAGATGGGACTTAAAGGTTATCTGATAGGGACATCAAAAATTTTCCTAAGAGGAAATCTGATGGCTGAACTAGATGCAAAAAGAACAAAAAGACATACTACCGCTGCCCTAGCTATACTGAAGCATATCCGAACTCGAATTGATCGTAAAAAGTACATAGCTAAGAAAAGAGGTTGCGTTCTTCTACAGTCATATTGGAGAGGCATTCGTGCTCGGGAATCGTATGAAATTAAGAGAAGAGAAGCAGCTGCCATCAAAATTCAAAAGACTATTCGTGGATACCTTGCCAGGAAACTCCATGTTAAAACAAGGATCTCTACTGTTGTTCTTCAGGCTGGTATACGAGCAAGGATTGCTCGCTGTGAATACAGACATAGGAGGAGGCAGGTTAAGGCTGCAATAGTTATTCAATCATATTGGCGTCGGTATAGATGCGCTTCAGAGTATAAGATGATTAGAAAACAATCTACCAATGACGAAGGTCTTATGAAGCAAAGGATGACTAACTTGGAAGAAACAGAGGAGGATCTGGTCGTGCCTTGTTCGTTGCTCAATAGCAGTACAGACTCCATTGATGAAACAATTGAAATGATTGCCAAGGAAAGCCATGTCTATCCGAAAGAAGTAGAAGAAGCATACTTTATTATTAAAGAGCCCACAAGTCCGGTTAAAGATACCGAACAAGTAGGGGCTCTCATAGCAGAAGTGGCTAACCTAAAGGCACTGTTGCAGGCTGAAAGACAAAGAGCTAATGAAAGTGAAAGGAAGTGTGTTGCAGCACAGAAATTAAGTGAGGAAGGACGTCAAAAACTAAAAGAAAACGAAAGGAAGGTGCAGCAACTTCAAGATTGCATAAGCAGGATGGTACATTGCATGGCAAATCAAATCTCGGAGATGAAAATGATCATGAGTTCTAACTCAGGTGCATCTAGTTCGATCCCAAACGAGGTTCTGACGGAGCCTACATCTAGTTGCTCTGATTCATCATCAGAAGACTTCACCTTTCCTGTCCCGACTTCATCTACCCCAGCTTTCTCTTCATTCGGTACCAACAATTTTCAGCTGATTGTGCAGGATATTTCAGCTGCAGAAATTCCAGGATCTGGCGGTGACAGGGAAGGGGGATTCTCTGACTACTTCTAA 3252 40.53 MDQSANIVVGSHIWVGDLESVWIDGVVLNITGEDAEIQTSDGRQVVVKLSNLYLRDAEAPATGIDDMTRMSYLNEPGLLHNLATRYGINEIYTYTGNILIAINPFQSIEKLYDACVMEQYKGAPIGELKPHVFAIADVAYRAMINYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQEREKYKLGNPKSFHYLNQSNCYELTGVNDAHDYLATKRAMDIVGICEQEQDAIFRVVAAILHLGNIDFAKGEESDSSFVKDEESKFHLDMTAELLMCDPQALEDALCKRMMITPEDVIKKSLDPLGATVSRDGLAKTIYSRLFDWLVGKINVSIGQDPCSEYLIGVLDIYGFESFKNNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVREEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACILPKSNHESFAQKLYQIFKNHKRFIKPKLARSEFAIVHYAGDVLYQSEHFLDKNKDYVVPEHQDLLSASKCSFVAGLFPPFPEDMAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRSGGVLEAVRIKCAGYPTHRTFSEFLSRFGVLAPEVLEGDYEEKVACGKILEKMGLKGYLIGTSKIFLRGNLMAELDAKRTKRHTTAALAILKHIRTRIDRKKYIAKKRGCVLLQSYWRGIRARESYEIKRREAAAIKIQKTIRGYLARKLHVKTRISTVVLQAGIRARIARCEYRHRRRQVKAAIVIQSYWRRYRCASEYKMIRKQSTNDEGLMKQRMTNLEETEEDLVVPCSLLNSSTDSIDETIEMIAKESHVYPKEVEEAYFIIKEPTSPVKDTEQVGALIAEVANLKALLQAERQRANESERKCVAAQKLSEEGRQKLKENERKVQQLQDCISRMVHCMANQISEMKMIMSSNSGASSSIPNEVLTEPTSSCSDSSSEDFTFPVPTSSTPAFSSFGTNNFQLIVQDISAAEIPGSGGDREGGFSDYF 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1546335 1569595 + CmaCh08G002690.1 Cma08g00269 298964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00269 1083 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cma08g00269 1083 Gene3D - 252 310 - -
Cma08g00269 1083 CDD MYSc_Myo11 76 720 IPR036018 -
Cma08g00269 1083 Gene3D - 784 835 - -
Cma08g00269 1083 Gene3D - 734 783 - -
Cma08g00269 1083 PANTHER MYOSIN 6 1062 - -
Cma08g00269 1083 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Cma08g00269 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 857 IPR027417 -
Cma08g00269 1083 Coils Coil 936 966 - -
Cma08g00269 1083 SMART iq_5 805 827 IPR000048 GO:0005515
Cma08g00269 1083 SMART iq_5 757 779 IPR000048 GO:0005515
Cma08g00269 1083 SMART iq_5 831 853 IPR000048 GO:0005515
Cma08g00269 1083 SMART iq_5 734 756 IPR000048 GO:0005515
Cma08g00269 1083 SMART iq_5 782 804 IPR000048 GO:0005515
Cma08g00269 1083 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Cma08g00269 1083 Pfam IQ calmodulin-binding motif 761 778 IPR000048 GO:0005515
Cma08g00269 1083 Pfam IQ calmodulin-binding motif 785 802 IPR000048 GO:0005515
Cma08g00269 1083 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 Pfam Myosin N-terminal SH3-like domain 10 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 MobiDBLite consensus disorder prediction 1010 1034 - -
Cma08g00269 1083 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Cma08g00269 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
Cma08g00269 1083 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Cma08g00269 1083 ProSiteProfiles IQ motif profile. 783 810 IPR000048 GO:0005515
Cma08g00269 1083 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cma08g00269 1083 Pfam Myosin head (motor domain) 65 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 6 1062 - -
Cma08g00269 1083 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 Gene3D - 667 733 - -
Cma08g00269 1083 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma08g00269 1083 Gene3D - 439 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00269 Cma-Chr8:1546335 Cma12g01141 Cma-Chr12:8982701 0 dispersed
Cma17g01318 Cma-Chr17:8881699 Cma08g00269 Cma-Chr8:1546335 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00269 K10357 - csv:101220626 1833.15