Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00269 | ATGGACCAGTCGGCCAATATCGTTGTTGGTTCCCATATATGGGTGGGAGATTTAGAGTCCGTTTGGATTGATGGGGTCGTATTGAACATCACCGGGGAAGATGCTGAGATTCAAACTAGTGATGGAAGACAGGTGGTTGTAAAACTGTCAAATCTATATCTAAGGGATGCAGAAGCTCCTGCTACTGGAATTGATGATATGACTAGAATGTCATATTTGAATGAGCCAGGGTTGCTGCATAATTTGGCTACCAGATATGGAATAAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAATCCATTCCAAAGTATTGAAAAACTGTATGATGCCTGTGTGATGGAGCAGTACAAGGGAGCACCAATTGGGGAGCTGAAGCCTCATGTTTTTGCAATTGCTGATGTTGCATATAGGGCTATGATAAATTATGGGAAAAGCAACTCCATTCTAGTAAGTGGTGAAAGTGGGGCTGGTAAAACTGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGGACTGTTGAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTCGGCAATGCAAAAACAGTAAGAAACAACAATTCAAGCCGTTTTGGGAAATTTGTTGAGATCCAATTTGACAAGAATGGAAGAATATCAGGAGCTGCCATCCGAACATATCTTCTTGAGAGATCACGGGTTTGCCAAATATCAGACCCTGAGCGCAACTATCATTGCTTTTATCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAAATATAAGCTGGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGACTGGTGTGAATGATGCTCACGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATATGTGAACAGGAGCAGGATGCAATTTTCAGAGTTGTGGCTGCAATTCTTCATCTTGGTAATATTGACTTTGCAAAAGGAGAAGAGTCCGATTCATCATTTGTAAAAGATGAAGAATCAAAATTTCACCTTGACATGACAGCAGAGCTTCTCATGTGTGATCCCCAAGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCAGAGGACGTTATCAAGAAAAGTCTTGATCCGCTTGGTGCAACAGTCAGCAGGGATGGATTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTAGGTAAAATCAATGTTTCCATCGGGCAAGATCCTTGCTCTGAATATCTGATCGGTGTACTGGATATTTACGGTTTTGAGAGCTTTAAAAATAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTGTTCAAGATGGAGCAAGAAGAATATGTAAGAGAGGAAATTGATTGGAGCTACATAGAATTTGTTGATAATCAAGATGTCCTTGACCTCATTGAGAAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCATGCATACTCCCAAAATCAAATCATGAATCATTTGCACAAAAGCTGTATCAAATCTTCAAAAATCATAAACGCTTCATCAAGCCAAAATTGGCTCGCTCAGAATTTGCGATTGTTCATTATGCAGGAGATGTTCTATATCAGTCAGAACATTTTCTAGACAAAAATAAAGATTATGTTGTCCCTGAACATCAAGATTTGTTAAGTGCTTCAAAATGTTCTTTTGTTGCTGGTCTCTTCCCTCCTTTTCCTGAGGACATGGCCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAGCTACAGCAGTTGATGGAAACATTAAATTCGACAGAACCCCATTATATAAGATGCGTGAAGCCCAATACTGTCCTGCAACCTGCCATATTTGAGAATGCGACTGTTATGCAACAATTACGTTCTGGTGGTGTTCTGGAGGCAGTTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTTGGAGTTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGTAGCATGCGGAAAGATTCTAGAGAAGATGGGACTTAAAGGTTATCTGATAGGGACATCAAAAATTTTCCTAAGAGGAAATCTGATGGCTGAACTAGATGCAAAAAGAACAAAAAGACATACTACCGCTGCCCTAGCTATACTGAAGCATATCCGAACTCGAATTGATCGTAAAAAGTACATAGCTAAGAAAAGAGGTTGCGTTCTTCTACAGTCATATTGGAGAGGCATTCGTGCTCGGGAATCGTATGAAATTAAGAGAAGAGAAGCAGCTGCCATCAAAATTCAAAAGACTATTCGTGGATACCTTGCCAGGAAACTCCATGTTAAAACAAGGATCTCTACTGTTGTTCTTCAGGCTGGTATACGAGCAAGGATTGCTCGCTGTGAATACAGACATAGGAGGAGGCAGGTTAAGGCTGCAATAGTTATTCAATCATATTGGCGTCGGTATAGATGCGCTTCAGAGTATAAGATGATTAGAAAACAATCTACCAATGACGAAGGTCTTATGAAGCAAAGGATGACTAACTTGGAAGAAACAGAGGAGGATCTGGTCGTGCCTTGTTCGTTGCTCAATAGCAGTACAGACTCCATTGATGAAACAATTGAAATGATTGCCAAGGAAAGCCATGTCTATCCGAAAGAAGTAGAAGAAGCATACTTTATTATTAAAGAGCCCACAAGTCCGGTTAAAGATACCGAACAAGTAGGGGCTCTCATAGCAGAAGTGGCTAACCTAAAGGCACTGTTGCAGGCTGAAAGACAAAGAGCTAATGAAAGTGAAAGGAAGTGTGTTGCAGCACAGAAATTAAGTGAGGAAGGACGTCAAAAACTAAAAGAAAACGAAAGGAAGGTGCAGCAACTTCAAGATTGCATAAGCAGGATGGTACATTGCATGGCAAATCAAATCTCGGAGATGAAAATGATCATGAGTTCTAACTCAGGTGCATCTAGTTCGATCCCAAACGAGGTTCTGACGGAGCCTACATCTAGTTGCTCTGATTCATCATCAGAAGACTTCACCTTTCCTGTCCCGACTTCATCTACCCCAGCTTTCTCTTCATTCGGTACCAACAATTTTCAGCTGATTGTGCAGGATATTTCAGCTGCAGAAATTCCAGGATCTGGCGGTGACAGGGAAGGGGGATTCTCTGACTACTTCTAA | 3252 | 40.53 | MDQSANIVVGSHIWVGDLESVWIDGVVLNITGEDAEIQTSDGRQVVVKLSNLYLRDAEAPATGIDDMTRMSYLNEPGLLHNLATRYGINEIYTYTGNILIAINPFQSIEKLYDACVMEQYKGAPIGELKPHVFAIADVAYRAMINYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQEREKYKLGNPKSFHYLNQSNCYELTGVNDAHDYLATKRAMDIVGICEQEQDAIFRVVAAILHLGNIDFAKGEESDSSFVKDEESKFHLDMTAELLMCDPQALEDALCKRMMITPEDVIKKSLDPLGATVSRDGLAKTIYSRLFDWLVGKINVSIGQDPCSEYLIGVLDIYGFESFKNNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVREEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACILPKSNHESFAQKLYQIFKNHKRFIKPKLARSEFAIVHYAGDVLYQSEHFLDKNKDYVVPEHQDLLSASKCSFVAGLFPPFPEDMAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRSGGVLEAVRIKCAGYPTHRTFSEFLSRFGVLAPEVLEGDYEEKVACGKILEKMGLKGYLIGTSKIFLRGNLMAELDAKRTKRHTTAALAILKHIRTRIDRKKYIAKKRGCVLLQSYWRGIRARESYEIKRREAAAIKIQKTIRGYLARKLHVKTRISTVVLQAGIRARIARCEYRHRRRQVKAAIVIQSYWRRYRCASEYKMIRKQSTNDEGLMKQRMTNLEETEEDLVVPCSLLNSSTDSIDETIEMIAKESHVYPKEVEEAYFIIKEPTSPVKDTEQVGALIAEVANLKALLQAERQRANESERKCVAAQKLSEEGRQKLKENERKVQQLQDCISRMVHCMANQISEMKMIMSSNSGASSSIPNEVLTEPTSSCSDSSSEDFTFPVPTSSTPAFSSFGTNNFQLIVQDISAAEIPGSGGDREGGFSDYF | 1083 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1546335 | 1569595 | + | CmaCh08G002690.1 | Cma08g00269 | 298964 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00269 | 1083 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
Cma08g00269 | 1083 | Gene3D | - | 252 | 310 | - | - | |
Cma08g00269 | 1083 | CDD | MYSc_Myo11 | 76 | 720 | IPR036018 | - | |
Cma08g00269 | 1083 | Gene3D | - | 784 | 835 | - | - | |
Cma08g00269 | 1083 | Gene3D | - | 734 | 783 | - | - | |
Cma08g00269 | 1083 | PANTHER | MYOSIN | 6 | 1062 | - | - | |
Cma08g00269 | 1083 | ProSiteProfiles | IQ motif profile. | 832 | 861 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 785 | 857 | IPR027417 | - | |
Cma08g00269 | 1083 | Coils | Coil | 936 | 966 | - | - | |
Cma08g00269 | 1083 | SMART | iq_5 | 805 | 827 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | SMART | iq_5 | 831 | 853 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | Pfam | IQ calmodulin-binding motif | 834 | 853 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | Pfam | IQ calmodulin-binding motif | 761 | 778 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | Pfam | IQ calmodulin-binding motif | 785 | 802 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | Pfam | Myosin N-terminal SH3-like domain | 10 | 50 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | MobiDBLite | consensus disorder prediction | 1010 | 1034 | - | - | |
Cma08g00269 | 1083 | ProSiteProfiles | Myosin motor domain profile. | 62 | 732 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | ProSiteProfiles | IQ motif profile. | 806 | 835 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 36 | 785 | IPR027417 | - | |
Cma08g00269 | 1083 | ProSiteProfiles | IQ motif profile. | 758 | 787 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | ProSiteProfiles | IQ motif profile. | 783 | 810 | IPR000048 | GO:0005515 | |
Cma08g00269 | 1083 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 601 | - | - | |
Cma08g00269 | 1083 | Pfam | Myosin head (motor domain) | 65 | 720 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | PANTHER | MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN | 6 | 1062 | - | - | |
Cma08g00269 | 1083 | SMART | MYSc_2a | 56 | 733 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | Gene3D | - | 667 | 733 | - | - | |
Cma08g00269 | 1083 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
Cma08g00269 | 1083 | Gene3D | - | 439 | 623 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00269 | Cma-Chr8:1546335 | Cma12g01141 | Cma-Chr12:8982701 | 0 | dispersed | |
Cma17g01318 | Cma-Chr17:8881699 | Cma08g00269 | Cma-Chr8:1546335 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00269 | K10357 | - | csv:101220626 | 1833.15 |