Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00271 ATGGCGGCCTCCTCCTCTTCTTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCATCGAAGCCAAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAGCATCAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGCAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCAGCGCCGTACGTTGAGATGGGCATCGCCGATTCAAATCTCGCCGGAGATTTCTGCTGTTAA 558 50.9 MAASSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNGYITRNPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGDFCC 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1580070 1580768 + CmaCh08G002710.1 Cma08g00271 298966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00271 185 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Cma08g00271 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 9 130 - -
Cma08g00271 185 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 130 - -
Cma08g00271 185 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00271 Cma-Chr8:1580070 Cma19g00080 Cma-Chr19:461193 1.83E-57 dispersed
Cma08g00271 Cma-Chr8:1580070 Cma02g01755 Cma-Chr2:9825835 2.62E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35480 PF03195 LOB 1.10E-34 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00271 K13945 - csv:101220863 302.753