Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00274 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTTCGAAGAGGAGGGAAAATAGTGCTGGAGGGAATGAGGAATCTACTGAACCGGTGGATGAAGAAGAGCTTTCTAATATCACTAAGCAGAAGGCTGCTGCGGCAAAGCAGTACATCGAGAATCATTACAAGGAGCAAAGGAGGAATCTGCAGGAGAGAAGGGAAAGACGCAATATATTGGAAAAGAAGCTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAATTTTTGGAGAAGAAGGAAACAGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGATGATTTTGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTATTTGTAGAGAGAAGACAACAGGTCAGGTATATGCTATGAAAAAGCTTAAAAAATCCGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTTCTTGCTGAAGTAGACAGCAATTGCATCGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTCTACCTTATTATGGAGTACCTACCTGGGGGAGATATGATGACTTTATTGATGAGAAAGGATACATTGACTGATGATGAAGCCAGGTTTTACGTTGGAGAGATAGTTTTGGCTATTGAGTCTATTCATAAGCACAATTACATTCATAGAGATATCAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTTTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTACACTCCAAGAACAAGATTTCAATATAGGGAGTGTCCGCAATGGAACTGCACAAAGTGATGAGCGCAATGCAGCTCCTACACGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGCAGAATGCTTGTTTTGTTGAAGAAAGGTTACGGAATGGAATGTGACTGGTGGTCACTTGGAGCAATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAGAACTCATATGAAGTTCCCTGACGAGGCAAAGCTATCTCTCTTGGCAAAAGATCTCATAAGCAAACTACTATGCAATGTTGACCAGAGGCTAGGTACAAACGGTGCGGATGAAATTAAGGTTCATCCGTGGTTTCAAAATCTTGAATGGGATAGGCTATATGAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTGCATCATCTAAATCTGGTCCATGGAGAAAGAACTTCGAAATCGTCAATGATTATCAATTGCCTGGGATGACTGAACTGAAGAAAAAATGCAACAAACCAAAAAGACCCTCAATCAAGTCACTCTTTGATGACGAATCGGAGGCACGAGATGCAGCTGATTCATCCATACGTTGTCAACCGAGCATGGGGGGTAGCTGTTCAAACTCAATGACATCTGAACTGGATGCATTTGAAAAGAGAAAAGAGTCAATAAGGTTAAGTTCGATCAACAATGGACGAGACGGATTCTTGGTTTCTAACAATCGACCTTGGAGCCGAGCTGAGCCGAGCCGAGCCCGTGGCAGCGTTGTTCGGAGTCAGGTAAATAACAGATCTGAAAAAGGAATGGCTTCGCTTTCAACTTGGTTCCGGTACATAGCTCACAAGCTCGAGTACTCCGTTTCTCTCAGTTGGAAGAACTATAAGGGAGGTCAAATTACTGACAAAGAAGTAGGTGATGCTGTCTGGAAGAATTTACTTCAGGGAAAGCTCACATACCTACACTGGTTTAAAGGAGTGGAGATGGCCCTAACTGTAGGTGAGACAGGAGGAACACTTCTCGTACGCAAATTACCTGTGGCAAATCCAACGAGTGTTTTTGTTGGAGACGTCGTGGTCGTAAAGGAGCCAGAGAAACCAGAGAACTATCTTGTCAGAAGATTGGCTGCAGTTGAAGGGTATGAAATGTTGTCTACTGATGAGAAGGATGAACCTTTCATCCTTGAGAAGGATGAGTGCTGGTTGTTGGCCGAAAATGAGAAGTTGAAGCCCAAGGAAGCATACGACAGCCGAACATTTGGTCCGGTTCCAATGTCGGACATTGTAGGCAGAGCCATATATTGCCTACGAACAGCGGTCGATCATGGCCCGGTGCAGAATAGTTATTATAGCATGAAAAGGGATTCACCTATATTGGAAATTGAACTGGACGTTGACGAGATGGCGAAAAATCACAAGGCCTGA 2334 42.97 MDSARSWFNKLQPRDRLRGSSKRRENSAGGNEESTEPVDEEELSNITKQKAAAAKQYIENHYKEQRRNLQERRERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRICREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFNIGSVRNGTAQSDERNAAPTRTQQEQLQHWQKNRRMLVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHMKFPDEAKLSLLAKDLISKLLCNVDQRLGTNGADEIKVHPWFQNLEWDRLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSASSKSGPWRKNFEIVNDYQLPGMTELKKKCNKPKRPSIKSLFDDESEARDAADSSIRCQPSMGGSCSNSMTSELDAFEKRKESIRLSSINNGRDGFLVSNNRPWSRAEPSRARGSVVRSQVNNRSEKGMASLSTWFRYIAHKLEYSVSLSWKNYKGGQITDKEVGDAVWKNLLQGKLTYLHWFKGVEMALTVGETGGTLLVRKLPVANPTSVFVGDVVVVKEPEKPENYLVRRLAAVEGYEMLSTDEKDEPFILEKDECWLLAENEKLKPKEAYDSRTFGPVPMSDIVGRAIYCLRTAVDHGPVQNSYYSMKRDSPILEIELDVDEMAKNHKA 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1598140 1609753 - CmaCh08G002740.1 Cma08g00274 298969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00274 777 SUPERFAMILY Protein kinase-like (PK-like) 93 450 IPR011009 -
Cma08g00274 777 MobiDBLite consensus disorder prediction 284 304 - -
Cma08g00274 777 Gene3D Umud Fragment, subunit A 617 750 - -
Cma08g00274 777 SMART pkinase_C_6 406 460 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma08g00274 777 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 494 - -
Cma08g00274 777 Coils Coil 62 82 - -
Cma08g00274 777 ProSiteProfiles AGC-kinase C-terminal domain profile. 406 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma08g00274 777 SMART serkin_6 120 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00274 777 CDD STKc_NDR_like 118 455 - -
Cma08g00274 777 ProSiteProfiles Protein kinase domain profile. 120 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00274 777 Gene3D Transferase(Phosphotransferase) domain 1 204 425 - -
Cma08g00274 777 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 494 - -
Cma08g00274 777 MobiDBLite consensus disorder prediction 1 50 - -
Cma08g00274 777 Gene3D Phosphorylase Kinase; domain 1 91 434 - -
Cma08g00274 777 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Cma08g00274 777 MobiDBLite consensus disorder prediction 9 30 - -
Cma08g00274 777 SUPERFAMILY LexA/Signal peptidase 640 739 IPR036286 -
Cma08g00274 777 Pfam Protein kinase domain 122 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00274 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00274 Cma17g01319 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00274 Cma-Chr8:1598140 Cma17g00158 Cma-Chr17:800797 0 dispersed
Cma17g01322 Cma-Chr17:8912799 Cma08g00274 Cma-Chr8:1598140 0 transposed
Cma17g01319 Cma-Chr17:8903507 Cma08g00274 Cma-Chr8:1598140 2.06E-123 wgd
Cma08g00274 Cma-Chr8:1598140 Cma08g01079 Cma-Chr8:6729107 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68746 PF00069 Pkinase 2.00E-55 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00274 K08790 - csv:101221720 904.049