Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00287 ATGCTAGTCTCGCGGCCAAAAGTTAGAGCCTTGCGTGATGGCGAGTCTCAAGGACAAATGGGAACAGCCTCTGTACAATGTCTAATTAACAGTACTTCCAGATTCATTCATCTGGTTTCATGCCATACTACAAAGTCTTTGCCTCTTCCTAAAAACTGCAAGAATCTTGCTGTTGTCTTGAAACATCTTAAACTCGTGCTTGATGATGTCGTTAGTCTCAAACTATCCTCAGATGAGTTACTTTATAGAGAATGTGAGTCTTTGGATATCGCTGTTAATGATGCTCGGGAGTTCATTGAAAACTGGTGTCCAAAGATGAGCAAAATTTGCAGCGCTTTGAAATGTGATCCGCTGCTTATAAAGATTCAAAGCTCTTTACAAGAGATTTGTGAGATTGTATGGAAGTTGTCGGAATCAGTATCATGTAGCTCAAGTGTAAATGCTATTCAGAAATGTCTTGAAGGTCTTCAATCATTGAAGCAGGAAAGGATATCTGAATCTATAGAAGAGGCTTTAATTAGTCAAAGGAGTGGCATTGGTCCGAACTCCGAAGATCTTCTAAAAATTATCGAAGTTCTTCATTTGATGTCGAATCAAGAACTTCTGAAGGAGACTATAGCAGTCGAAAAGGAGAGAATCGATGCTGAACGAAACAATGTGAAAGAGGAACTATATCGGATCAATGAAATTATGGGTCTAATTATCCGTATACGAGATTGGATGATTAGAAAGGACTATTTTCATGGGATAAATGGAGTATCAGTTCCTTCATACTTCCGCTGTCCATTGTCGTTGGAACTGATGCTTGATCCAGTAATTGTGGCGTCTGGCCAAACCTATGACAGGTCCTCCATTCAAAAGTGGATAGATAGTGGGCTGAACATCTGCCCCAACACTCATCAGACGCTCACGCATACAAATCTTATTCCCAATTACACTGTTAAAGCCATGATTTTGAGTTGGTGCGATGAAAACAAACTGAATATTTCCAGTTTATCATCGTTGGTTCAATTGTCTCAGCAGGATTCAAATCGAAGTGATAGCTCTCGATCATCTCCTGAAGTTGAAAAGGGTTCTAACAATCGAAATGGGGACGTTTTTACTACTTTAATTGGGGGAAAATCTAATGAAGGCCAGAGAAATGAAACCGAAAAGTTTGACCACCCTTCCCCTCAGCAGTCATATATCTACAGCAGGAGTGTATCAGCCTCCAGTGCCTTATCTAGCATTGATTATGTTCCATCGGCACTTAATGAGGTGTTGAAGATATCAACTAAACACGAAATCACATCAGAACATCCTGCTGCATCTCATAATGAAGCATCGGGGTTGAATTCCTCATTAGAAGGTGGACAATTACAGGCTTGTAAAACAGAAACAGGCATGGTGGAGAATGGTAACTGTAATAGTACAACAGGTAACTTAGTTCCAGTCGAACCTGAATCCGATAACTCTTTGGGAGATTTGCATATCAAGAAAGTAGTTGCAGACCTTAAGAGCCAAAGGGATGAAGTTCAAATGAAAGCTGCAGAAGAATTAAGGCTTCTTGCCAAGGATAACGTAGAGAACCGTGTTATAATAGGCCAATGTGGGGCTATAGGCCCGTTACTTTCACTGTTATATTCAGATGGAAAGCAGATACAAGAGCATGCAGTGACAGCTCTCTTAAACCTGTCAATTAATGAAAATAATAAAGTCATGATTGCACAAGGAGGAGCCATAGAACCACTTATTCATGTTTTGAAGACAGGAACATCTACTGCTAAAGAAAATTCTGCAGCAACTTTATTCAGTCTCTCTGTATTGGAAGAATACAAGGCCAAAATCGGTCGGTCTGGTGCAGTTAAAGCCTTGGTCAATCTCTTAGGTGAGGGTACACTGAGGGGTAAGAAAGATGCAGCCACCGCTTTGTTCAACTTGTCAATTTTTCATGAAAATAAGGTTCGTATAGTTCAAGCAGGAGCAGTTAAGTACCTTGTTGGGCTACTAGCCACTACTACGGGAATGGTCGATAAGGCTGCAGCACTTCTTGCTAATTTGTCGACAATTTCAGAGGGTCGATTGGCAATTGCTCGGGAAGGGGGTATACCCTTGTTGGTAGAAATTGTTGAATGTGGATCTATGAGAGGAAAGGAAAATGCTGCATCTATTCTGTTGCAACTATGCCTTCATAGTCCCAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCCGTTCCACCTCTAGTCGCCCTATCTCAGTCTGGCACACCTAGAGCAAAAGAAAAGGCACAACAGCTACTCAGCCATTTTCGGAATCAAAGAGATGGAAGCACAGGGAAAGCAAAATCATAG 2331 41.18 MLVSRPKVRALRDGESQGQMGTASVQCLINSTSRFIHLVSCHTTKSLPLPKNCKNLAVVLKHLKLVLDDVVSLKLSSDELLYRECESLDIAVNDAREFIENWCPKMSKICSALKCDPLLIKIQSSLQEICEIVWKLSESVSCSSSVNAIQKCLEGLQSLKQERISESIEEALISQRSGIGPNSEDLLKIIEVLHLMSNQELLKETIAVEKERIDAERNNVKEELYRINEIMGLIIRIRDWMIRKDYFHGINGVSVPSYFRCPLSLELMLDPVIVASGQTYDRSSIQKWIDSGLNICPNTHQTLTHTNLIPNYTVKAMILSWCDENKLNISSLSSLVQLSQQDSNRSDSSRSSPEVEKGSNNRNGDVFTTLIGGKSNEGQRNETEKFDHPSPQQSYIYSRSVSASSALSSIDYVPSALNEVLKISTKHEITSEHPAASHNEASGLNSSLEGGQLQACKTETGMVENGNCNSTTGNLVPVEPESDNSLGDLHIKKVVADLKSQRDEVQMKAAEELRLLAKDNVENRVIIGQCGAIGPLLSLLYSDGKQIQEHAVTALLNLSINENNKVMIAQGGAIEPLIHVLKTGTSTAKENSAATLFSLSVLEEYKAKIGRSGAVKALVNLLGEGTLRGKKDAATALFNLSIFHENKVRIVQAGAVKYLVGLLATTTGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVECGSMRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGSTGKAKS 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1657425 1662200 - CmaCh08G002870.1 Cma08g00287 298982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00287 776 Coils Coil 198 218 - -
Cma08g00287 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Cma08g00287 776 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Cma08g00287 776 MobiDBLite consensus disorder prediction 429 450 - -
Cma08g00287 776 SUPERFAMILY ARM repeat 491 763 IPR016024 -
Cma08g00287 776 MobiDBLite consensus disorder prediction 755 776 - -
Cma08g00287 776 MobiDBLite consensus disorder prediction 435 450 - -
Cma08g00287 776 MobiDBLite consensus disorder prediction 340 377 - -
Cma08g00287 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 329 IPR013083 -
Cma08g00287 776 Coils Coil 774 776 - -
Cma08g00287 776 CDD RING-Ubox_PUB 259 301 IPR045210 -
Cma08g00287 776 Gene3D - 628 774 IPR011989 -
Cma08g00287 776 PANTHER U BOX DOMAIN-CONTAINING 25 771 - -
Cma08g00287 776 Pfam Armadillo/beta-catenin-like repeat 604 641 IPR000225 GO:0005515
Cma08g00287 776 Pfam Armadillo/beta-catenin-like repeat 520 559 IPR000225 GO:0005515
Cma08g00287 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 654 695 IPR000225 GO:0005515
Cma08g00287 776 SMART arm_5 643 682 IPR000225 GO:0005515
Cma08g00287 776 SMART arm_5 561 601 IPR000225 GO:0005515
Cma08g00287 776 SMART arm_5 520 560 IPR000225 GO:0005515
Cma08g00287 776 SMART arm_5 683 723 IPR000225 GO:0005515
Cma08g00287 776 SMART arm_5 602 642 IPR000225 GO:0005515
Cma08g00287 776 Gene3D - 482 627 IPR011989 -
Cma08g00287 776 SUPERFAMILY RING/U-box 253 327 - -
Cma08g00287 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 613 655 IPR000225 GO:0005515
Cma08g00287 776 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 25 771 - -
Cma08g00287 776 Pfam U-box domain 255 326 IPR003613 GO:0004842|GO:0016567
Cma08g00287 776 MobiDBLite consensus disorder prediction 340 393 - -
Cma08g00287 776 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01494 Cma-Chr1:10491002 Cma08g00287 Cma-Chr8:1657425 1.95E-17 dispersed
Cma08g00287 Cma-Chr8:1657425 Cma20g00982 Cma-Chr20:5237544 2.89E-64 dispersed
Cma17g01336 Cma-Chr17:8981988 Cma08g00287 Cma-Chr8:1657425 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00287 - - csv:101219353 1196.03