Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00294 ATGTCCCTTGATAACCATCTGTTTGGTTACCAAGAAAATTTTCGAACTTTTCCCGGAAAAGAGAATTCCCATCTCTCATTTGACTTCAATTACTTGGAAGAGATGTTGTTTGCGGATATGTCGTCGTTGTCATCGTCATCATCGTCTGATTCTAGCCCTTGTTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCGTTGTGCAAGACGATCGGACACCGAAGGAGGAGAGGGCTTATAGAGGTGTGCGGAGGAGGCCATGGGGGAAGTACGCAGCCGAGATAAGGGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCGGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCAGCGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGGTGGGAGGTCGGGTGCTCGCCTGTTTTAGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATAGCAGAAGCGGAGAAGATGGAGAAGAAGATGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 636 47.48 MSLDNHLFGYQENFRTFPGKENSHLSFDFNYLEEMLFADMSSLSSSSSSDSSPCLSPEMHVKEEIEDGDIVVQDDRTPKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPAEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKIAEAEKMEKKMKKKNVVVFEDLGVEYLEELLSLTS 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1686346 1686981 - CmaCh08G002940.1 Cma08g00294 298989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00294 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 16 209 - -
Cma08g00294 211 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Cma08g00294 211 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Cma08g00294 211 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Cma08g00294 211 SUPERFAMILY DNA-binding domain 83 143 IPR016177 GO:0003677
Cma08g00294 211 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Cma08g00294 211 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Cma08g00294 211 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Cma08g00294 211 PANTHER DNA-BINDING DOMAIN 16 209 IPR044808 GO:0003700|GO:0009873
Cma08g00294 211 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01751 Cma08g00294 CCT
Cma08g00294 Cma19g00084 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00294 Cma-Chr8:1686346 Cma19g00084 Cma-Chr19:506769 7.37E-56 dispersed
Cma08g00294 Cma-Chr8:1686346 Cma08g00295 Cma-Chr8:1690893 8.70E-29 tandem
Cma02g01751 Cma-Chr2:9801242 Cma08g00294 Cma-Chr8:1686346 8.91E-54 wgd
Cma08g00294 Cma-Chr8:1686346 Cma08g01086 Cma-Chr8:6782139 8.79E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35484 PF00847 AP2 9.50E-15 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00294 K14516 - csv:101205053 261.151