Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00294 | ATGTCCCTTGATAACCATCTGTTTGGTTACCAAGAAAATTTTCGAACTTTTCCCGGAAAAGAGAATTCCCATCTCTCATTTGACTTCAATTACTTGGAAGAGATGTTGTTTGCGGATATGTCGTCGTTGTCATCGTCATCATCGTCTGATTCTAGCCCTTGTTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCGTTGTGCAAGACGATCGGACACCGAAGGAGGAGAGGGCTTATAGAGGTGTGCGGAGGAGGCCATGGGGGAAGTACGCAGCCGAGATAAGGGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCGGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCAGCGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGGTGGGAGGTCGGGTGCTCGCCTGTTTTAGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATAGCAGAAGCGGAGAAGATGGAGAAGAAGATGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA | 636 | 47.48 | MSLDNHLFGYQENFRTFPGKENSHLSFDFNYLEEMLFADMSSLSSSSSSDSSPCLSPEMHVKEEIEDGDIVVQDDRTPKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPAEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKIAEAEKMEKKMKKKNVVVFEDLGVEYLEELLSLTS | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1686346 | 1686981 | - | CmaCh08G002940.1 | Cma08g00294 | 298989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00294 | 211 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 16 | 209 | - | - | |
Cma08g00294 | 211 | Gene3D | AP2/ERF domain | 83 | 143 | IPR036955 | GO:0003700|GO:0006355 | |
Cma08g00294 | 211 | Pfam | AP2 domain | 84 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00294 | 211 | CDD | AP2 | 84 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00294 | 211 | SUPERFAMILY | DNA-binding domain | 83 | 143 | IPR016177 | GO:0003677 | |
Cma08g00294 | 211 | PRINTS | Ethylene responsive element binding protein signature | 84 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00294 | 211 | PRINTS | Ethylene responsive element binding protein signature | 107 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00294 | 211 | ProSiteProfiles | AP2/ERF domain profile. | 83 | 141 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00294 | 211 | PANTHER | DNA-BINDING DOMAIN | 16 | 209 | IPR044808 | GO:0003700|GO:0009873 | |
Cma08g00294 | 211 | SMART | rav1_2 | 83 | 147 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01751 | Cma08g00294 | CCT | |
Cma08g00294 | Cma19g00084 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00294 | Cma-Chr8:1686346 | Cma19g00084 | Cma-Chr19:506769 | 7.37E-56 | dispersed | |
Cma08g00294 | Cma-Chr8:1686346 | Cma08g00295 | Cma-Chr8:1690893 | 8.70E-29 | tandem | |
Cma02g01751 | Cma-Chr2:9801242 | Cma08g00294 | Cma-Chr8:1686346 | 8.91E-54 | wgd | |
Cma08g00294 | Cma-Chr8:1686346 | Cma08g01086 | Cma-Chr8:6782139 | 8.79E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35484 | PF00847 | AP2 | 9.50E-15 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00294 | K14516 | - | csv:101205053 | 261.151 |