Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00314 ATGGAAGAGGTTGAAGAAGCTAATAGAGAAGCTGTGGAGAGTTGTCATAAAGTGTTGAATCTATTGACTGTCGCGTTGCCCCAAGATCATCAATCCAAGATTCAGAGTTGTTTAATGGCGGAAACTGGAGCGGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTAATTCTTCTTCTTCTGGGTTGGGGCATGCAAGGGTCAGGAAAAACAGGGTTAAGCCACCCTTCTCTTCCTCTTCCTCCTCTTCTCCTCTTCCCCAATCCATGTTCTTACAAACTTCTTCCCCCGATTGCAGAATGGACCTTCTCCAGGCCAGGAATTTGCAGATGGGTCCTCTTTCTTTGGGGAATCCATGTCTGGAATTGAGCTCAAATGCTAAAAGTTGTTCAATCCAACAACCTCAGTCTACTTCCCATCATTTTCTTCAGAACAGGATGTTGTTGAATAATCCTAATCCTAATGCTCCACAGCCTGAAATGGTGTATCTTAGGAGCCACAGTGGTATTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCTTTCATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGGCTTTCATTTGATCGGGACACCCCGATCTTCCGATCAGAATTCACACCATAGGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGTACAGGGAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCCGCCATAAGCAACAAGCTTGCAGATATTCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCGAGAAAGCATGTCGAGAGGTGTGTCGAGGAACCATCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCGAGAATAGCTTCTCAGTCTGAAAATACTTGA 1020 44.71 MEEVEEANREAVESCHKVLNLLTVALPQDHQSKIQSCLMAETGAAVFKFRKVLCLLNSSSSGLGHARVRKNRVKPPFSSSSSSSPLPQSMFLQTSSPDCRMDLLQARNLQMGPLSLGNPCLELSSNAKSCSIQQPQSTSHHFLQNRMLLNNPNPNAPQPEMVYLRSHSGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSGFHLIGTPRSSDQNSHHRRKCSGRGEDGSVKCGSTGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCVEEPSMLIVTYEGEHNHPRIASQSENT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1790125 1792536 - CmaCh08G003140.1 Cma08g00314 299009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00314 339 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 339 - -
Cma08g00314 339 Gene3D WRKY domain 257 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma08g00314 339 MobiDBLite consensus disorder prediction 218 232 - -
Cma08g00314 339 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma08g00314 339 MobiDBLite consensus disorder prediction 74 91 - -
Cma08g00314 339 Pfam Plant zinc cluster domain 224 269 IPR018872 -
Cma08g00314 339 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 339 IPR044810 GO:0003700
Cma08g00314 339 SUPERFAMILY WRKY DNA-binding domain 269 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma08g00314 339 MobiDBLite consensus disorder prediction 65 91 - -
Cma08g00314 339 MobiDBLite consensus disorder prediction 212 234 - -
Cma08g00314 339 Pfam WRKY DNA -binding domain 273 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma08g00314 339 SMART WRKY_cls 271 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00314 Cma19g00062 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00314 Cma-Chr8:1790125 Cma19g00062 Cma-Chr19:331030 9.47E-127 dispersed
Cma17g01219 Cma-Chr17:8415383 Cma08g00314 Cma-Chr8:1790125 0 wgd
Cma02g01770 Cma-Chr2:9870246 Cma08g00314 Cma-Chr8:1790125 5.32E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35490 PF03106 WRKY 3.30E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00314 - - csv:101216822 532.717