Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00318 ATGAGCAAATTCGAATCCAGTTACCATGAGATTCTACTTCTTGACATCGGCAAAGCCGCCCGAAGGAGGTGGAGAATTGCCTTTGCAGTAATATCCTCAATTCGGGCCATGCTTTCCCTAGCAGTGTCAAGAAGAAAAGATCATTGCAGTTTAATCAACTGTGAGATCTTGGAGGAAGGTTCATACGAGGAACAGATAGTCTACACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTAAAGAACACAAACTTGGAAGCTTACTGTGAGCATGGGAAAGCTCCAGCCATTGCTAAGTCTCTAGGAACAAATCCAGAGAAGGGAATCAAGGATAATGATGATGTTGTGAATGAACGACGTCAAGTATTCGGTTCGAATACTTACCACAAGCGGCCTCCCAAGAGTTTCTTTCATTTTGTGGTGGAAGCTTTCAAGGATACCACCATTGTCATTTTACTTATATGTGCGGCTCTGGCACTTGGGTTTGGAATAAAAGAACATGGAGGACAAGAAGGATGGTATGAAGGCGGGAGCATATTTGTAGCTGTTGCGCTGGTGGTTGTTGTTTCAGCCATCAGCAACTTCAGACAGGAGATTCAATTCGAGAAGTTGTCAAAAATAAGTAACAACATCAAAGTGGAGGTAGTGAGAGATGGAAGACGCATAGAAGTTTCCATCTTCAATCTAGTGGTTGGAGATGTCGTGGTTCTAAACCTTGGGGACCAAATTCCAGCAGATGGGTTGTTCTTAAGTGGTCATTCATTGCAGGTGGATGAGTCAAGCATGACAGGAGAGAGCGATCATGTGATACTCAATTCAACGGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACAGCCTGGGGCGAGATGATGAGCTCGATATCTCGAGATTCTGAGGAGCAAACACCACTGCAAGTTCGTCTTAACAAATTGACCACTACTATAGGAAAGGTAGGCCTCTCAGTCGCCTTCATAGTCCTTGTTGTCATGTTGGCGCGCTATTTCACAGGAAACACAACCGATGATTTTGGGAACACAGAGTACAATGGTCGAAAAACAGACGTAGATGATGTGATCAATGCAGTTACCCGTATAGTTGCTGCTGCAATTACCATAGTAGTTGTTGCAATCCCTGAAGGCTTGCCATTGGCTGTTACATTAACACTCGCTTATTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGGAACTTTCTGCTTGTGAAACGATGGGATCAGCAACTGTGATTTGCACGGACAAAACAGGAACTTTGACATTAAACAAAATGAAAGTTACAAAATTTTGGCTCGGCCAAGAGTTCATTGAGGAAGAAAACCCTTCCCACACCATAGCAGAGACTGTTAGTGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCAACCTTCTCCGGAATCCGAAATTGAAATCTCTGGTAGTCCAACTGAGAAAGCCATTCTCTCTTGGGCGGTCTCAGAATTCAGTATGGACATGGTAAAGTTGAAAAATGCATATTCCATTCTTCATGTGGAAACCTTCAATTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAACGTGTTCTAGTTACATTGAAAGAAATGGGAAAACATATCCCTTAGATAACGAAAGCCGAAGAAAACTTGAGATGATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGAGGAAAAAAATAGCATGCCAACTGCCTCAGACGTGAAAGAAGACGACTATATATTAATGGGAATAGTTGGCATGAAAGACCCATGTAGAAAAGGGGTGAAGAAAGCTGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAAATGATCACAGGTGACAACGTTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTGGACCACAACACCGCATGCAGAGGAGAAGTAATAGAAGGTTCTGAATTCCGAAACTACTCAAGTGAAGAAAGACTGCAGAGGGTTGATCAAATCAAGGTGATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACTGGAGACGGCACAAATGACGCACCTGCTCTAAAAGAGGCTGACATTGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAGGAGAGTTCAGACATCGTTATCTTGGATGATAACTTCACTACAGTAGTCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAATATCCAGAAATTCATCCAATTTCAATTGACAGTCAACGTAGCAGCTCTCACAATTAACTTTATAGCAGCAGTATCAGCAGGAGAGGTTCCCTTAACAGCAGTCCAATTGTTGTGGGTGAACCTCATAATGGATACACTGGGTGCTCTTGCACTTGCTACTGAAAGACCAAATGATGAACTAATGCACAAGCCTCCAGTGGGAAGAACAGAACCCCTAATAACAAATATTATGTGGAGGAACCTTCTAGCCCAAGCTTTATATCAAATAGCAATACTCCTAATTTTCCAGTTCCAAGGAAGCAACATCTTCGATGTAAGTGAAATGGTAAACGATACACTAATCTTCAACACTTTTGTCCTCTGCCAAATCTTCAACGAGTTCAACTCAAGGAAACTAGAGAAACAGAACGTCTTTGAAGGCATTCTAAAGAATCATCTATTTCTAGGAATTGTGGGAGTAACGGTTGTTCTACAGGTCATCATGGTAGAATTCCTAAAGAAATTTGCAAATACAGTGAATCTAAATGGCTGGCAGTGGGGACTTTGCATTGCTATTGCAGCTGTTTCTTGGCCTATTGGTTGGATTGTCAAACTCTTGCCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAGTGTTTTAAGGGCTGA 3045 42.23 MSKFESSYHEILLLDIGKAARRRWRIAFAVISSIRAMLSLAVSRRKDHCSLINCEILEEGSYEEQIVYTKDDQKKLIEMVKNTNLEAYCEHGKAPAIAKSLGTNPEKGIKDNDDVVNERRQVFGSNTYHKRPPKSFFHFVVEAFKDTTIVILLICAALALGFGIKEHGGQEGWYEGGSIFVAVALVVVVSAISNFRQEIQFEKLSKISNNIKVEVVRDGRRIEVSIFNLVVGDVVVLNLGDQIPADGLFLSGHSLQVDESSMTGESDHVILNSTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTTIGKVGLSVAFIVLVVMLARYFTGNTTDDFGNTEYNGRKTDVDDVINAVTRIVAAAITIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRELSACETMGSATVICTDKTGTLTLNKMKVTKFWLGQEFIEEENPSHTIAETVSELINQGVGLNTTGSVYQPSPESEIEISGSPTEKAILSWAVSEFSMDMVKLKNAYSILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSTCSSYIERNGKTYPLDNESRRKLEMIIQGMAASSLRCIAFAYRQISEEEKNSMPTASDVKEDDYILMGIVGMKDPCRKGVKKAVETCKSAGVSIKMITGDNVFTAKAIATECGILDLDHNTACRGEVIEGSEFRNYSSEERLQRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVVTVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSNIFDVSEMVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVGVTVVLQVIMVEFLKKFANTVNLNGWQWGLCIAIAAVSWPIGWIVKLLPVSDKPFLSYFKCFKG 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1808084 1812301 - CmaCh08G003180.1 Cma08g00318 299013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00318 1014 Pfam haloacid dehalogenase-like hydrolase 433 757 - -
Cma08g00318 1014 Gene3D - 142 997 - -
Cma08g00318 1014 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Cma08g00318 1014 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Cma08g00318 1014 PRINTS P-type cation-transporting ATPase superfamily signature 635 646 - -
Cma08g00318 1014 PRINTS P-type cation-transporting ATPase superfamily signature 657 667 - -
Cma08g00318 1014 PRINTS P-type cation-transporting ATPase superfamily signature 743 762 - -
Cma08g00318 1014 PRINTS P-type cation-transporting ATPase superfamily signature 767 779 - -
Cma08g00318 1014 SMART Cation_ATPase_N_a_2 89 164 IPR004014 -
Cma08g00318 1014 PRINTS H+-transporting ATPase (proton pump) signature 590 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00318 1014 PRINTS H+-transporting ATPase (proton pump) signature 743 759 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00318 1014 PRINTS H+-transporting ATPase (proton pump) signature 775 800 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00318 1014 SFLD C1.7: P-type atpase like 417 796 - -
Cma08g00318 1014 Pfam Cation transporter/ATPase, N-terminus 95 158 IPR004014 -
Cma08g00318 1014 PANTHER CALCIUM-TRANSPORTING ATPASE 20 987 - -
Cma08g00318 1014 PANTHER CATION TRANSPORTING ATPASE 20 987 - -
Cma08g00318 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 442 639 IPR023299 GO:0000166
Cma08g00318 1014 CDD P-type_ATPase_Ca_PMCA-like 116 876 - -
Cma08g00318 1014 Gene3D - 114 311 - -
Cma08g00318 1014 Gene3D - 445 642 IPR023299 GO:0000166
Cma08g00318 1014 SUPERFAMILY Calcium ATPase, transduction domain A 210 309 IPR008250 -
Cma08g00318 1014 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 60 1000 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cma08g00318 1014 SFLD p-type atpase 417 796 IPR044492 -
Cma08g00318 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 93 1000 IPR023298 -
Cma08g00318 1014 Gene3D - 432 788 IPR023214 -
Cma08g00318 1014 SUPERFAMILY HAD-like 433 848 IPR036412 -
Cma08g00318 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Cma08g00318 1014 Pfam Cation transporting ATPase, C-terminus 828 998 IPR006068 -
Cma08g00318 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 379 474 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00318 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 714 823 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00318 1014 Pfam E1-E2 ATPase 211 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00318 Cma-Chr8:1808084 Cma12g01119 Cma-Chr12:8851127 0 dispersed
Cma12g00603 Cma-Chr12:3149699 Cma08g00318 Cma-Chr8:1808084 1.86E-92 dispersed
Cma08g00318 Cma-Chr8:1808084 Cma12g00923 Cma-Chr12:7124315 0 transposed
Cma08g00318 Cma-Chr8:1808084 Cma05g00724 Cma-Chr5:4038867 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00318 K01537 - csv:101220140 1689.47