Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00318 | ATGAGCAAATTCGAATCCAGTTACCATGAGATTCTACTTCTTGACATCGGCAAAGCCGCCCGAAGGAGGTGGAGAATTGCCTTTGCAGTAATATCCTCAATTCGGGCCATGCTTTCCCTAGCAGTGTCAAGAAGAAAAGATCATTGCAGTTTAATCAACTGTGAGATCTTGGAGGAAGGTTCATACGAGGAACAGATAGTCTACACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTAAAGAACACAAACTTGGAAGCTTACTGTGAGCATGGGAAAGCTCCAGCCATTGCTAAGTCTCTAGGAACAAATCCAGAGAAGGGAATCAAGGATAATGATGATGTTGTGAATGAACGACGTCAAGTATTCGGTTCGAATACTTACCACAAGCGGCCTCCCAAGAGTTTCTTTCATTTTGTGGTGGAAGCTTTCAAGGATACCACCATTGTCATTTTACTTATATGTGCGGCTCTGGCACTTGGGTTTGGAATAAAAGAACATGGAGGACAAGAAGGATGGTATGAAGGCGGGAGCATATTTGTAGCTGTTGCGCTGGTGGTTGTTGTTTCAGCCATCAGCAACTTCAGACAGGAGATTCAATTCGAGAAGTTGTCAAAAATAAGTAACAACATCAAAGTGGAGGTAGTGAGAGATGGAAGACGCATAGAAGTTTCCATCTTCAATCTAGTGGTTGGAGATGTCGTGGTTCTAAACCTTGGGGACCAAATTCCAGCAGATGGGTTGTTCTTAAGTGGTCATTCATTGCAGGTGGATGAGTCAAGCATGACAGGAGAGAGCGATCATGTGATACTCAATTCAACGGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACAGCCTGGGGCGAGATGATGAGCTCGATATCTCGAGATTCTGAGGAGCAAACACCACTGCAAGTTCGTCTTAACAAATTGACCACTACTATAGGAAAGGTAGGCCTCTCAGTCGCCTTCATAGTCCTTGTTGTCATGTTGGCGCGCTATTTCACAGGAAACACAACCGATGATTTTGGGAACACAGAGTACAATGGTCGAAAAACAGACGTAGATGATGTGATCAATGCAGTTACCCGTATAGTTGCTGCTGCAATTACCATAGTAGTTGTTGCAATCCCTGAAGGCTTGCCATTGGCTGTTACATTAACACTCGCTTATTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGGAACTTTCTGCTTGTGAAACGATGGGATCAGCAACTGTGATTTGCACGGACAAAACAGGAACTTTGACATTAAACAAAATGAAAGTTACAAAATTTTGGCTCGGCCAAGAGTTCATTGAGGAAGAAAACCCTTCCCACACCATAGCAGAGACTGTTAGTGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCAACCTTCTCCGGAATCCGAAATTGAAATCTCTGGTAGTCCAACTGAGAAAGCCATTCTCTCTTGGGCGGTCTCAGAATTCAGTATGGACATGGTAAAGTTGAAAAATGCATATTCCATTCTTCATGTGGAAACCTTCAATTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAACGTGTTCTAGTTACATTGAAAGAAATGGGAAAACATATCCCTTAGATAACGAAAGCCGAAGAAAACTTGAGATGATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGAGGAAAAAAATAGCATGCCAACTGCCTCAGACGTGAAAGAAGACGACTATATATTAATGGGAATAGTTGGCATGAAAGACCCATGTAGAAAAGGGGTGAAGAAAGCTGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAAATGATCACAGGTGACAACGTTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTGGACCACAACACCGCATGCAGAGGAGAAGTAATAGAAGGTTCTGAATTCCGAAACTACTCAAGTGAAGAAAGACTGCAGAGGGTTGATCAAATCAAGGTGATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACTGGAGACGGCACAAATGACGCACCTGCTCTAAAAGAGGCTGACATTGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAGGAGAGTTCAGACATCGTTATCTTGGATGATAACTTCACTACAGTAGTCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAATATCCAGAAATTCATCCAATTTCAATTGACAGTCAACGTAGCAGCTCTCACAATTAACTTTATAGCAGCAGTATCAGCAGGAGAGGTTCCCTTAACAGCAGTCCAATTGTTGTGGGTGAACCTCATAATGGATACACTGGGTGCTCTTGCACTTGCTACTGAAAGACCAAATGATGAACTAATGCACAAGCCTCCAGTGGGAAGAACAGAACCCCTAATAACAAATATTATGTGGAGGAACCTTCTAGCCCAAGCTTTATATCAAATAGCAATACTCCTAATTTTCCAGTTCCAAGGAAGCAACATCTTCGATGTAAGTGAAATGGTAAACGATACACTAATCTTCAACACTTTTGTCCTCTGCCAAATCTTCAACGAGTTCAACTCAAGGAAACTAGAGAAACAGAACGTCTTTGAAGGCATTCTAAAGAATCATCTATTTCTAGGAATTGTGGGAGTAACGGTTGTTCTACAGGTCATCATGGTAGAATTCCTAAAGAAATTTGCAAATACAGTGAATCTAAATGGCTGGCAGTGGGGACTTTGCATTGCTATTGCAGCTGTTTCTTGGCCTATTGGTTGGATTGTCAAACTCTTGCCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAGTGTTTTAAGGGCTGA | 3045 | 42.23 | MSKFESSYHEILLLDIGKAARRRWRIAFAVISSIRAMLSLAVSRRKDHCSLINCEILEEGSYEEQIVYTKDDQKKLIEMVKNTNLEAYCEHGKAPAIAKSLGTNPEKGIKDNDDVVNERRQVFGSNTYHKRPPKSFFHFVVEAFKDTTIVILLICAALALGFGIKEHGGQEGWYEGGSIFVAVALVVVVSAISNFRQEIQFEKLSKISNNIKVEVVRDGRRIEVSIFNLVVGDVVVLNLGDQIPADGLFLSGHSLQVDESSMTGESDHVILNSTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTTIGKVGLSVAFIVLVVMLARYFTGNTTDDFGNTEYNGRKTDVDDVINAVTRIVAAAITIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRELSACETMGSATVICTDKTGTLTLNKMKVTKFWLGQEFIEEENPSHTIAETVSELINQGVGLNTTGSVYQPSPESEIEISGSPTEKAILSWAVSEFSMDMVKLKNAYSILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSTCSSYIERNGKTYPLDNESRRKLEMIIQGMAASSLRCIAFAYRQISEEEKNSMPTASDVKEDDYILMGIVGMKDPCRKGVKKAVETCKSAGVSIKMITGDNVFTAKAIATECGILDLDHNTACRGEVIEGSEFRNYSSEERLQRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVVTVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSNIFDVSEMVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVGVTVVLQVIMVEFLKKFANTVNLNGWQWGLCIAIAAVSWPIGWIVKLLPVSDKPFLSYFKCFKG | 1014 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1808084 | 1812301 | - | CmaCh08G003180.1 | Cma08g00318 | 299013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00318 | 1014 | Pfam | haloacid dehalogenase-like hydrolase | 433 | 757 | - | - | |
Cma08g00318 | 1014 | Gene3D | - | 142 | 997 | - | - | |
Cma08g00318 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 258 | 272 | - | - | |
Cma08g00318 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 435 | 449 | - | - | |
Cma08g00318 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 635 | 646 | - | - | |
Cma08g00318 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 657 | 667 | - | - | |
Cma08g00318 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 743 | 762 | - | - | |
Cma08g00318 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 767 | 779 | - | - | |
Cma08g00318 | 1014 | SMART | Cation_ATPase_N_a_2 | 89 | 164 | IPR004014 | - | |
Cma08g00318 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 590 | 608 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma08g00318 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 743 | 759 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma08g00318 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 775 | 800 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma08g00318 | 1014 | SFLD | C1.7: P-type atpase like | 417 | 796 | - | - | |
Cma08g00318 | 1014 | Pfam | Cation transporter/ATPase, N-terminus | 95 | 158 | IPR004014 | - | |
Cma08g00318 | 1014 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 20 | 987 | - | - | |
Cma08g00318 | 1014 | PANTHER | CATION TRANSPORTING ATPASE | 20 | 987 | - | - | |
Cma08g00318 | 1014 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 442 | 639 | IPR023299 | GO:0000166 | |
Cma08g00318 | 1014 | CDD | P-type_ATPase_Ca_PMCA-like | 116 | 876 | - | - | |
Cma08g00318 | 1014 | Gene3D | - | 114 | 311 | - | - | |
Cma08g00318 | 1014 | Gene3D | - | 445 | 642 | IPR023299 | GO:0000166 | |
Cma08g00318 | 1014 | SUPERFAMILY | Calcium ATPase, transduction domain A | 210 | 309 | IPR008250 | - | |
Cma08g00318 | 1014 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 60 | 1000 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Cma08g00318 | 1014 | SFLD | p-type atpase | 417 | 796 | IPR044492 | - | |
Cma08g00318 | 1014 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 93 | 1000 | IPR023298 | - | |
Cma08g00318 | 1014 | Gene3D | - | 432 | 788 | IPR023214 | - | |
Cma08g00318 | 1014 | SUPERFAMILY | HAD-like | 433 | 848 | IPR036412 | - | |
Cma08g00318 | 1014 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 437 | 443 | IPR018303 | - | |
Cma08g00318 | 1014 | Pfam | Cation transporting ATPase, C-terminus | 828 | 998 | IPR006068 | - | |
Cma08g00318 | 1014 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 379 | 474 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma08g00318 | 1014 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 714 | 823 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma08g00318 | 1014 | Pfam | E1-E2 ATPase | 211 | 413 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00318 | Cma-Chr8:1808084 | Cma12g01119 | Cma-Chr12:8851127 | 0 | dispersed | |
Cma12g00603 | Cma-Chr12:3149699 | Cma08g00318 | Cma-Chr8:1808084 | 1.86E-92 | dispersed | |
Cma08g00318 | Cma-Chr8:1808084 | Cma12g00923 | Cma-Chr12:7124315 | 0 | transposed | |
Cma08g00318 | Cma-Chr8:1808084 | Cma05g00724 | Cma-Chr5:4038867 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00318 | K01537 | - | csv:101220140 | 1689.47 |