Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00323 ATGTTTGCCACAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGTTACTGTCTCTTTAAACTCTCTCCTTCCACCACAAAAGATCAAGAAGAAACGAAGCCTCCCCGGAAACCCAGACCCAGATGCTGAAGTGATAGCACTTTCACCAAGAACACTTCTTGCTACGAATAGATTTGTGTGTGAAATTTGCAACAAAGGCTTCCAAAGGGATCAAAATTTGCAGCTTCATAGGAGAGGTCATAATTTGCCGTGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCTGAGCCATCTTGTGTTCATCATCATCCTTCAAGAGCTTTGGGAGATCTCACGGGAATCAAAAAGCATTATTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGAGAAATGTTCGAAAGTTTATGCTGTTCAATCGGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGAAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCTTTGGCTGAGGAAAGTGCACGGCTTTCGGCTAACCAATTCGTCATCGCGCCCGAGGTTGAGGCGGCCGAGGTTGGGGCGGCTACCTCCGCCCAATCTCTTTTCCCTTTTGGTAGTCATAATCAATTCCCTAGCTCTTCGCTGTCACGGTCGCCACAAACTTATATGTCCCTTAACCCTTGGGATAATCCCCAAAACCCTAACCCTAATCAAACCCACCAAATTATCAAGCCAGAAGACTCACATTCTCACCATTTTCACCAAATTCCAGCTTTGCCCCTCGCCGGCTCCTCCCCAAGCAACGCCACCAACAACCCTTTTGGTATAATTCAAGACCACCACCGCCGCCATCACCACCACCACCAGAAGGCAGCCTCTTCATCCTCCTCTTCCATGATAGCCACACCGTTTAGGAACCTCCACGTGTCGGTGAATCCAGCCATGTCAGCTCATCTATCAGCCACTGCCTTACTCCAAAAGGCTGCAACAGTTGGGGTTGGAGCTGTGAAATCCAGTCAGCATCAACCCGAGTCAGTGGGCCATATGACTCACTTCAATATGCCTGACATCGCCGAGTTCGCTGCACCAACTCATATGGACTCGCTGACTCATCAACTCGGCCCCGACTACGCCACGTGGCAGAAGACAGATAGACTGACCAGGGACTTTCTTGGTTTGACTGGCGATGGGAACGGCGGCGGAGGTGGCAGTGGAGGGATGCAGGTTAGCATGAGTGTCAAGGATATGCTAACGTACGCTGGAGGATTGGAGATTTTTAAGCCTCATAATAATAATAATAATAATAATAATAATAATAATCATAGTGCTTTTGGTTTTGCGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA 1425 46.6 MFATTMSNSTSLSEEVTVSLNSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVIAPEVEAAEVGAATSAQSLFPFGSHNQFPSSSLSRSPQTYMSLNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPALPLAGSSPSNATNNPFGIIQDHHRRHHHHHQKAASSSSSSMIATPFRNLHVSVNPAMSAHLSATALLQKAATVGVGAVKSSQHQPESVGHMTHFNMPDIAEFAAPTHMDSLTHQLGPDYATWQKTDRLTRDFLGLTGDGNGGGGGSGGMQVSMSVKDMLTYAGGLEIFKPHNNNNNNNNNNNHSAFGFAEPAANETWDC 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1849759 1852846 - CmaCh08G003230.1 Cma08g00323 299018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00323 474 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 21 454 - -
Cma08g00323 474 Gene3D Classic Zinc Finger 128 193 - -
Cma08g00323 474 Gene3D Classic Zinc Finger 38 107 - -
Cma08g00323 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 454 - -
Cma08g00323 474 SMART c2h2final6 100 130 IPR013087 -
Cma08g00323 474 SMART c2h2final6 59 81 IPR013087 -
Cma08g00323 474 SMART c2h2final6 135 155 IPR013087 -
Cma08g00323 474 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Cma08g00323 474 MobiDBLite consensus disorder prediction 447 462 - -
Cma08g00323 474 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Cma08g00323 474 MobiDBLite consensus disorder prediction 447 474 - -
Cma08g00323 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00323 Cma-Chr8:1849759 Cma03g00762 Cma-Chr3:5974951 5.36E-111 dispersed
Cma17g01205 Cma-Chr17:8313467 Cma08g00323 Cma-Chr8:1849759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35491 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00323 K25870 - csv:101208253 653.284