Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00327 ATGGGCAACTCCGACTACGTGTATCCATCGGCGGCGACGGAGGGCGGCGGCGAGTGTTTACACAGGGCGGCGATTCCACCGCCGCAGCCGTTCGTTAAGTCGTTGAAGAACTCTTTAAAGGAGACATTCTTCCCGGACGACCCACTACGGCAGTTCAAAAACCAATCGGCGGCGAGGAAAGTGCTGTTGGGTTTGCAGTACTTTTTCCCTGTGCTGGAGTGGGGACCACGTTATCGTTTAGGGCTACTGAAATCGGATCTTATCTCCGGTATCACCATTGCTAGCCTCGCTATTCCTCAGGGGATTAGCTATGCCAAGCTCGCTAATTTACCCCCCATCCTCGGCCTTTATTCCAGTTTTATTCCGCCGCTGATTTATGCAATGATGGGAAGCTCTAAGGACTTGGCCGTCGGAACCGTGGCGGTGGCGTCGCTTCTCATTAGCGCCATGTTAGGAGCTGAGGTTAGCCCCACTCAAAACCCAACTCTTTACCTCCATCTTGCGTTCACCGCCACGTTCTTTGCCGGAGTCTTTCAAGCCTCTTTAGGCCTGTTGAGATTAGGATTGATCGTGGATTTCCTATCACACGCAACAATAGTAGGGTTCATGGCGGGTGCAGCCACGGTGGTGTGCTTACAGCAGCTGAAAGGCATCCTTGGGCTAACCCATTTCACTCACGCGACTGATCTCGTCTCGGTCCTCCGCTCCATTTTTAGTCAAGTCGATCAGTGGAGATGGGAAAGTGGAGTATTGGGATGCTGTTTTCTCTTCTTCCTGCTGGTCACCAGATACTTTAGCAAGAAAAAGCCGAAGTTCTTTTGGATATCAGCAATGGCACCTTTGACGTCGGTAATTTTGGGAAGCCTTCTCGTGTTTCTCACTCATGCAGAAAAACACGGTATTGAAGTGATTGGTGAATTGAAGAAAGGGCTAAATCCGGTATCGATTACCGATTTAGTGATGGTGTCACCTCATCTTTCTATCGCTATTAAAACCGGCATCATCACGGGTGTCATTGCTCTCGCGGAAGGAATTGCAGTTGGAAGAAGCTTTGCAATGTTCAAGCATTACAATATCGATGGCAACAAGGAAATGGTAGCCATTGGCACCATGAACATGGTCGGCTCTTGCTTCTCTTGCTATCTCACCACTGGCCCATTTTCCCGATCGGCAGTCAACTTCAATGCCGGATGCAAAACCGCGGTTTCCAACGTCGTAATGGCCATTGCAGTCATGTTGACGCTCCTCTTTTTGACTCCTCTGTTTCACTACACACCTCTCGTCGTCCTTTCTTCCATTATCATTTCCGCCATGCTTGGCCTCATCGATTACGACGCCGCCATTCACTTGTGGAAAGTCGATAAGTTCGATTTCCTTGTCTGTATTGGTGCTTATGCTGGTGTCGTCTTCGCCAGTGTTGAAATTGGCTTGGTCATTGCGGTGGCTATATCGCTGCTCAGACTACTTTTGTTCGTCGCAAGGCCGAGGACGCTTGTGCTCGGAAACCTTCCTAATTCCACTGTTTACAGGAATGTCGAGCAATACCCAAATGCTGGAAATGTTCCCGGCATTCTCATACTTGAGATCGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGACAGGATAAAGGTTTCAGGAGATAGTACCTTACAATATGTCGTATTAGACATGAGTGCTGTTGGAAACATTGATACGAGTGGAATAAGCATGTTTGAAGAGATCAAGAAGATTTTAGACAGAAGGGGGTTGAAGATAGTTTTGGCGAACCCGGGAGCTGAGGTGATGAAGAAGCTGGACAAGGGGAAGTTCATTGAGAACCTGGGACACGAATGGATCTATCTTACGGTGGCTGAAGCTGTAGCAGCCTGCAACTATATGCTTCACTCTTGCAAACCAAACCCTGAAACTGATGAGAAAACAGAGGCATGGAACAGTGTGTCAATCGCAATCAACTTGATCTCCTTTTGTTGTTCTTCTTCTTTCACATTAGAGCCGACCTCTCCTCTCGAACCATTATCGGTGGGTGGACGATCGATTCCTCGTCTAACCAGAATGGCGCCCACTAAGAAATCGAAGAAGCGCAAAAGGGATTCCAAGAAATTGAAGAAATGTAAAAACCTAAGCGTCGTTCCTATGGAACCCAGAGTCTCAGAGCCCGATTGGTGGGAAATTTTCTGGCACAAGAACTGTTCAACTTCAGGTTCTTCTGGACCTAATGATGAAGCAGAAGTATTCAAGTACTTCTTTCGAACTTCAAAGAAAACTTTCGATTACATTTGTTCCCTCGTACGAGAAGATCTCGTGTCAAGGCCTCCATCCGGGCTTATCAACATTGAGGGGAGACTTCTTAGTGTGGAGAAGCAGGTTGCTATTGCTATGAGAAGATTGGCATCTGGTGAGTCACAAGTTTCTGTGGGAGCTTCCTTTGGAGTTGGTCAGTCTACCGTCTCTCAGGTTACTTGGAGATTCGTCGAAGCTTTGGAACAACGTGCGAAGCACCATCTTCGGTGGCCGAGTTCCTCCAGGTTGGAGGAAATCAAATCACAGTTTGAAGCTTCCTTTGGGCTGCCTAATTGTTGTGGAGCCATAGATGCAACACACATCATTATGACCCTTCCTGCAGTACAAACATCAGATGATTGGTGTGATACCAACAAAAATTACAGTATGTTCTTGCAGGGAATCGTTGATCACCAGATGAGATTTCTTGACATTGTAACTGGTTGGCCCGGGGGCATGACGACTAGTAGATTATTGAAGTGCTCAAAGTTTTTCAAACTATGCAATGTCGGTGAGCGTTTGAACGGAAATGCAAGAAAGTTGTCTGGAGGATCAGAAATCAGAGAATACTTAGTTGGCGGAGTTGGCTATCCTCTTCTTCCTTGGTTAATTACTCCTTATGAAAGCGATGACCTACCGCCATTGAAGCTCAACTTCAATACTGTGCACGGAGCTGCGAAATCGCTCGCTGTGAGGGCATTCTCTCAGTTGAAGGGCAGCTGGAGAATCCTCAACAAGGTTATGTGGAGACCCGACAAGCGGAAGTTGCCGAGCATTATATTGGTATGCTGTTTACTTCAAAACATTATAATTGACAATGGAGATGAGTTACAACCAGATGTTGCTTTATCTGGTCATCATGATTTGGGATATCAGGAGCATTGTTGTAAGCAGATTGATCCATTGGGAAACACTTCAAGGGAGAACTTGGCCAACCATTGGCATCAAAACAAAGAGAAAATCTGTTCTTCTTAA 3297 46.71 MGNSDYVYPSAATEGGGECLHRAAIPPPQPFVKSLKNSLKETFFPDDPLRQFKNQSAARKVLLGLQYFFPVLEWGPRYRLGLLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLISAMLGAEVSPTQNPTLYLHLAFTATFFAGVFQASLGLLRLGLIVDFLSHATIVGFMAGAATVVCLQQLKGILGLTHFTHATDLVSVLRSIFSQVDQWRWESGVLGCCFLFFLLVTRYFSKKKPKFFWISAMAPLTSVILGSLLVFLTHAEKHGIEVIGELKKGLNPVSITDLVMVSPHLSIAIKTGIITGVIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNFNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYDAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIAVAISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNAGNVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKVSGDSTLQYVVLDMSAVGNIDTSGISMFEEIKKILDRRGLKIVLANPGAEVMKKLDKGKFIENLGHEWIYLTVAEAVAACNYMLHSCKPNPETDEKTEAWNSVSIAINLISFCCSSSFTLEPTSPLEPLSVGGRSIPRLTRMAPTKKSKKRKRDSKKLKKCKNLSVVPMEPRVSEPDWWEIFWHKNCSTSGSSGPNDEAEVFKYFFRTSKKTFDYICSLVREDLVSRPPSGLINIEGRLLSVEKQVAIAMRRLASGESQVSVGASFGVGQSTVSQVTWRFVEALEQRAKHHLRWPSSSRLEEIKSQFEASFGLPNCCGAIDATHIIMTLPAVQTSDDWCDTNKNYSMFLQGIVDHQMRFLDIVTGWPGGMTTSRLLKCSKFFKLCNVGERLNGNARKLSGGSEIREYLVGGVGYPLLPWLITPYESDDLPPLKLNFNTVHGAAKSLAVRAFSQLKGSWRILNKVMWRPDKRKLPSIILVCCLLQNIIIDNGDELQPDVALSGHHDLGYQEHCCKQIDPLGNTSRENLANHWHQNKEKICSS 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1868717 1876886 + CmaCh08G003270.1 Cma08g00327 299022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00327 1098 Pfam DDE superfamily endonuclease 877 1042 IPR027806 -
Cma08g00327 1098 Gene3D STAS domain 494 640 IPR036513 -
Cma08g00327 1098 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 654 - -
Cma08g00327 1098 SUPERFAMILY SpoIIaa-like 521 638 IPR036513 -
Cma08g00327 1098 TIGRFAM sulP: sulfate permease 70 633 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma08g00327 1098 PANTHER SULFATE TRANSPORTER 2 654 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma08g00327 1098 CDD STAS_SulP_like_sulfate_transporter 515 630 - -
Cma08g00327 1098 Pfam STAS domain 515 633 IPR002645 -
Cma08g00327 1098 ProSiteProfiles STAS domain profile. 514 637 IPR002645 -
Cma08g00327 1098 Pfam Sulfate permease family 83 462 IPR011547 GO:0016021
Cma08g00327 1098 ProSitePatterns SLC26A transporters signature. 112 133 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00229 Cma-Chr4:1111652 Cma08g00327 Cma-Chr8:1868717 4.28E-115 dispersed
Cma04g01204 Cma-Chr4:6131017 Cma08g00327 Cma-Chr8:1868717 1.29E-114 dispersed
Cma04g02608 Cma-Chr4:17821985 Cma08g00327 Cma-Chr8:1868717 8.05E-98 dispersed
Cma08g00327 Cma-Chr8:1868717 Cma08g00684 Cma-Chr8:4212615 0 dispersed
Cma10g00737 Cma-Chr10:3345283 Cma08g00327 Cma-Chr8:1868717 7.60E-37 dispersed
Cma11g00707 Cma-Chr11:3451195 Cma08g00327 Cma-Chr8:1868717 9.66E-35 dispersed
Cma12g01176 Cma-Chr12:9249349 Cma08g00327 Cma-Chr8:1868717 5.65E-31 dispersed
Cma19g00268 Cma-Chr19:1918558 Cma08g00327 Cma-Chr8:1868717 0 dispersed
Cma14g01741 Cma-Chr14:12745410 Cma08g00327 Cma-Chr8:1868717 0 wgd
Cma17g01201 Cma-Chr17:8290197 Cma08g00327 Cma-Chr8:1868717 0 wgd
Cma06g01377 Cma-Chr6:8979400 Cma08g00327 Cma-Chr8:1868717 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00327 K17471 - csv:101222260 1203.35