Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00330 ATGGATTTAGTAAATGCGGGCGAGGCCAGTGATGCCCCGGCGGGTAAGAACTCCGGTAATCAAGTGGCGGACATTGTTTCCGGTAAGTCTAGTAATCCCGGAGAGAAGGATCTGGGTTCAAAATTGGAGACAGGAAGCAAAAGCAGCAAGGATATGGTTTTTCGAGCGGATAAGATTGATTTCAAGAATTGGGATATTCAGCTGGACAAGCACTTGAGCAGGGCTTGGTCGAGGGACAGGGAAGTGCCAGACAAAAAGGAAGAATGGGAGATTGACTTGTCTAAACTTGATATCAGATACGTCAAAGCTCATGGAACTTTTGGTACCATTTACAGAGGAAATTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGACGGTGTCTCCTCAGTCGCTGAAATTGCTGCTCTTCGTACATCTTTTCGCCAGGAAGTTGCTGTTTGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTTTGGAGCATCAATGGGGACGTACAACCTTAAAATCCCTTCCCAAAACTCATCAAGTGATGGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGAGGAACACTAAAGGGATTTTTAATAAAAAATAGGAAAAAGAAACTTGCACTTAAGGTTGTAATTCAACTTGTTTTGGATCTTTCTAGAGGTTTGAGCTATCTACACTCCAAAAAGATTGTACACCGTGATATCAAAACAGAAAATGTGCTGCTAGATGCTCAGAGGACTCTGAAAATCGTTGATTTTGGCGTCGCCCGAGTCGAAGCACAGAATCCAAGGGATATGACTGGAGAGACTGGCACCCTCGGTTACATGGCCCCAGAGGTCCTTGATGGCAAGCCTTATAATCGTAAATGTGATGTGTATAGTTTTGGTATATGTTTGTGGGAAACATATTGTTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTCTCATCTGCAGTTGTGCAGCAGAATTTACGACCAGAAATCCCTCGATGTTGCCCGAGTTCCTTAGCAAATATCATGAGAAGGTGTTGGGATGCAAATCCAGAAAGGCGACCTGACATGGATGAGGTTGTAAAATTGTTGGAAGCCATTGATACAAGTAAGGGAGGTGGCATGATACCTGAAGACCAGGCATCTCGTTGTTTCTGCTTCGGCAAGCCTCGTGGTCCTTAG 1212 44.47 MDLVNAGEASDAPAGKNSGNQVADIVSGKSSNPGEKDLGSKLETGSKSSKDMVFRADKIDFKNWDIQLDKHLSRAWSRDREVPDKKEEWEIDLSKLDIRYVKAHGTFGTIYRGNYDGNDVAVKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFFGASMGTYNLKIPSQNSSSDGNQSFPSRACCVVVEYLPGGTLKGFLIKNRKKKLALKVVIQLVLDLSRGLSYLHSKKIVHRDIKTENVLLDAQRTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVQQNLRPEIPRCCPSSLANIMRRCWDANPERRPDMDEVVKLLEAIDTSKGGGMIPEDQASRCFCFGKPRGP 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1899823 1904208 + CmaCh08G003300.1 Cma08g00330 299025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00330 403 MobiDBLite consensus disorder prediction 1 47 - -
Cma08g00330 403 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 37 395 - -
Cma08g00330 403 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 37 395 - -
Cma08g00330 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Cma08g00330 403 CDD STKc_MAP3K-like 103 374 - -
Cma08g00330 403 SUPERFAMILY Protein kinase-like (PK-like) 79 374 IPR011009 -
Cma08g00330 403 Gene3D Transferase(Phosphotransferase) domain 1 200 390 - -
Cma08g00330 403 MobiDBLite consensus disorder prediction 14 28 - -
Cma08g00330 403 SMART serkin_6 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00330 403 Pfam Protein tyrosine and serine/threonine kinase 104 374 IPR001245 GO:0004672|GO:0006468
Cma08g00330 403 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Cma08g00330 403 PRINTS Tyrosine kinase catalytic domain signature 197 210 IPR001245 GO:0004672|GO:0006468
Cma08g00330 403 PRINTS Tyrosine kinase catalytic domain signature 235 253 IPR001245 GO:0004672|GO:0006468
Cma08g00330 403 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Cma08g00330 403 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672|GO:0006468
Cma08g00330 403 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00330 Cma-Chr8:1899823 Cma11g01426 Cma-Chr11:9401145 0 dispersed
Cma14g01731 Cma-Chr14:12710656 Cma08g00330 Cma-Chr8:1899823 0 wgd
Cma17g01198 Cma-Chr17:8264821 Cma08g00330 Cma-Chr8:1899823 2.67E-32 wgd
Cma06g01390 Cma-Chr6:9017207 Cma08g00330 Cma-Chr8:1899823 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68747 PF07714 PK_Tyr_Ser-Thr 2.70E-57 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00330 - - mcha:111018484 751.125