Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00363 ATGCTTCCGTGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTCTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTACTGAAATCTGTTACGAGGGTCGATCAGTTGAAGGAACTGGCTCAATTGCTTGAGGCTGAATGTGTATTACCTCTGGTTGTTGCAATTTCTGGGAGAGTAAGCTCTGATACACCAATAAATTGCGAGTTTAGTGGGCTGAGGGGAGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTGAAGCACAACGATGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCATTTGTGGTGGGAGCTCGAAGTGCCACAAATTTTATATTACCAGTAGTGAGTGAGATATTTGAAGAGTCTGGCAGATCTCTTATGCGTGGAACCTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCAAATAGAGCGTGTACTACCTACTGGCACGTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGACATTGGTACGATTAGAATACAACGACCACACAAAGGGCCATTTTATGTCTCCCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAATGGGCCAGGTGGTACAAGTATGCTTCCCTGGGTTTGAGCATATTTGGTTTGTATCTCGTCACAAAGCATGCTATTCTTTATCTCTTGGGGAGAAGGCGTCGCTGGAAATATCAGAAAAGGGTCCTAGCTGCAGCTGCCAAGAGATCAAACCAAGAAAATGAAGGGGAAAATGGTACGACTAACAATGGCTCAGATGGTACGAAGAGAGACCGTTCAATGCCAGATCTTTGTGTAATATGTCTTGAGAGAGACTACAATGCCGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCGTGTTGTTCACATTTAACGAACTGTCCACTCTGTCGTCGACGAATTGAGCTGGTAGTAAAGACATACCGCCATTGA 1029 45.77 MLPWGGLSCCLSAAALYLLGRSSGRDAELLKSVTRVDQLKELAQLLEAECVLPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSATNFILPVVSEIFEESGRSLMRGTLDYLQGLKMLGVKQIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASLGLSIFGLYLVTKHAILYLLGRRRRWKYQKRVLAAAAKRSNQENEGENGTTNNGSDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTYRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2088339 2096022 + CmaCh08G003630.1 Cma08g00363 299058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00363 342 CDD RING-HC_LRSAM1 294 333 - -
Cma08g00363 342 PANTHER - 1 309 IPR044231 GO:0004842|GO:0016567
Cma08g00363 342 SUPERFAMILY RING/U-box 294 336 - -
Cma08g00363 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Cma08g00363 342 MobiDBLite consensus disorder prediction 266 287 - -
Cma08g00363 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 335 - -
Cma08g00363 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 341 IPR013083 -
Cma08g00363 342 MobiDBLite consensus disorder prediction 268 285 - -
Cma08g00363 342 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00363 Cma-Chr8:2088339 Cma17g00691 Cma-Chr17:5740243 4.86E-15 dispersed
Cma08g00363 Cma-Chr8:2088339 Cma08g00797 Cma-Chr8:4814783 1.33E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00363 K15688 - csv:101218196 624.394