Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00372 ATGTCGCTGAGAGTACTCAATCCAAATGCAGAAGTTCTCAACAAATCCGCCGCTCTGCACATGAATATCAATGCCGCGAAGGGCTTGCAAGATGTCCTCAAGAGCAATCTCGGTCCTAAAGGAACAATCAAAATGCTTGTGGGTGGTGCTGGAGATATTAAGCTCACCAAAGACGGCAACACTTTGCTTAAAGAAATGCAAATTCAAAATCCCACAGCAATCATGATAGCACGAACAGCTGTTGCTCAGGACGACAGCAGTGGAGATGGTACTACTTCTACCGTGATTTTTATAGGCGAACTTATGAAACAGTCAGAGCGTTACATTGATGAAGGCATGCATCCACGTGTCCTGGTTGATGGTTTTGAGATTGCCAAAAGAGCAACTCTTCAATTCCTTGAACAATTTAAGACTAATGTTGTGGTTGGTGAGGAGCCGGACAAAGAGATCCTTAAAATGGTGGCAAGAACGACACTAAGAACAAAGTTGTATGAAGCATTGGCAGATCAATTGACTGATATAGTAGTTAATGCAGTGCTCTGTATTCGTAAACCAGAAGAAGCCATTGACTTGTTCATGGTGGAAATCATGCACATGCGTCATAAGTTTGATGCTGACACTCGCTTGGTTGAAGGTCTTGTCCTTGATCACGGCTCTAGACATCCTGATATGAAACGGAGGGCTGAGAATTGTTTTATTTTAACCAGCAACGTTTCTCTGGAATATGACAAAAGTGAAATAAATGCTGGATTTTTCTACTCTAATGCGGAACAGAGGGAAGCCATGGTTGCTGCTGAAAGGCGTCAGGTTGATGAAAGAGTTAAGAAAATCATTGAATTGAAAAACAAGGTTTGTGCAGGTAATGACAACAACTTTGTTATCATAAATCAAAAAGGAATTGATCCCCCATCTTTGGATATGCTCGCAAGGGAAGGGATAATTGCCCTTCGTAGAGCCAAGAGAAGAAACATGGAAAGGTTGGTTTTGGCCTGTGGAGGAGAGGCTATAAATTCTGTTGAAAATCTTGCTCCTGATTGCCTTGGATGGGCTGGACTGGTTTATGAACATGTTCTTGGGGAAGAGAAATATACATTTGTGGAAAATGTGAAGAATCCCCATTCGTGTACAATCTTGATCAAGGGACCTAATGATCACACGATCGCTCAAATTAAGGATGCTGTCCGTGATGGTCTTAGATCTGTTAAAAACACCATCGAGGATGAATCCGTTGTCATGGGTGCCGGATCCTTTGAGGTTGCTGCCAGACAACATTTGATAAACGAAGTGAAGAAAACAGTAAAAGGACGCGCTCAACTTGGCGTCGAAGCTTTTGCCAATGCCCTTCTTGTGATTCCCAAGACACTTGCTGAGAACTCTGGGCTTGACACTCAGGATGTGCTCATTGCTCTTAAGGGAGCGCATGACCGGGGCAATATTGTCGGGCTAAACCAGCATACAGGAGAACCAATCGACCCCCAAATGGAGGGTATCTTTGATAACTACACAGTGAAGCGCCAACTTATCAATTCTGGGCCTGTAATTGCGTCGCAGTTGCTCTTGGTGGACGAGGATTCTCTACCAATTCCCATGATACCTAGGACCCTAAAATCAGTTCCGATGTCCATTTCTTCCCATCCCCTTCTCCTTCTTCTCACCATAGTCTCCCTCTCCGCCGCCGCCTCCTCCTCCGCCGCTGAATGCCCTCTTAACTTCACCGTCCTCCGCCAGTTCTCGCGGGGCACTACCGCTTCCCGCCCCGACTTCTCCGATGACTGTCAATACATCCGTCTTGGTCTCCGCCTCGTCCTCTCTCAGTACCTCAAACTCACTGGCTCCTTCTTGCCCCCTGTGAACTCTTCCGATTCGTGCTGGAATGCTTACCAATCGGTCGTTGATGAAACTCGGCCAAATTTCAACGTTCGGACCTCTTGTGGATTTCAAACTGGCTGGATCTCTCAGGGCTGTATGAATATCACTACCAAATCGGAGTTCGAGAGAGTCGTTTCTAAATCGGCGCTGACTAGCGTTGCTGCGAGTTGTAATCAATCGCTCGAAAACGGTTCCCCCTGTGCCTCGTGCACGACGAGGCTCGCGATCGTTCAGGCCTCGTTTTTGACCGGTCCGTCAATCGGCAATGTCACCGATTGCCCTGCCTATCCGTCGATCTACGCGGCGGCGTTTGCAAATCCATTCGGACCGACGGATCAGGGAACTGCCAAATGCTTGTTCTCGCTTAATCCTCTCTCGTCGGGGAATTCATCAGGCAAGAAGCTGAACACAGTGGTGTTGGTGGTTCTGATTTGTTGCAGCGTCGCAGCAGCAACGGCGGCAGTAGTCGCCGGCGGATGGTTTTTCTGGCGAAAACAGGGGAAATCAAAGAAAAACGACAGAATTCGTAGAGTAGAAACAGGAATGGGTTCTGGATTGGAATCCATAAGTGCAAGCACGACGCTGGTGAAGTTCACATTCGATGAAATCAAAAGGGCAACGAGGAATTTCTCAAGAGATAACATAATTGGAAGAGGAGGCTATGGAAATGTGTATAAAGGGGTACTTTCTGATGATTCTGAAGTCGCATTGAAGCGGTTCAAGAACTGTTCTGCAGCAGGGGACGCCATTTTTGCACACGAAGTTGAGGTAATTTCTAGTGTTCGACATGTTAACCTTGTTGCTTTAAGAGGTTATTGTATTGCAACAACGCCATTAGAGGGTCATCAAAGGATAATTGTATGTGATTTGATGAAGAATGGTAGTGTTTATGATCATTTATTTGGGTATTCTGATAAGAGATTGAGTTGGCCAATTAGGCAGAAAATTGCCCTTGGCACAGCCAGGGGATTGGCTTACCTCCATTATGGAGCTCAGCCCGCCATTATCCATAGAGATATCAAAGCCAGCAACATTCTTTTGGATGAAAATTTTGAACCAAAGGTTGCTGACTTTGGTTTAGCTAAGTTCACTCCTGAAGGAATGACTCATTTGAGTACTCGTGTTGCCGGGACGATGGGGTATGTAGCTCCCGAGTACGCGTTGTACGGTCAGTTGACGGAGCGGAGTGATGTCTATAGCTTTGGAGTTGTTCTTCTCGAGCTTTTGAGCGGGAGGAAGGCGCTCGGGGTGCGGAGCGCCGATAGCCAGCCGTTTCTAGTGACCGATTGGGCTTGGTCCTTGGTTAGGGAGCAAAAGGCCATGGATGTTGTTGAAGAAGGTATGCCTGAGCTGGGTTCACCTGAGGTTGTTGAGAAGTATGTGTTGATTGCTGTTCTTTGTTCACATCCACAGCTCTATGCTCGGCCATCAATGGATCAAATCGTGAAAATGCTCGAAACTGACCTCTCTGTTCCTTCAATCCCTGAGAGACCCATCTCTTTGGTTGCGGAGATTGATGAAATAGAGAGATCTATGAGTAGTAGTGGCTCTGTTCAGCATTCTGGTTCTTTTGGCTTTCATGGTTACACGTTACCGAATGACCGAAAGTAG 3480 46.47 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKSNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDSSGDGTTSTVIFIGELMKQSERYIDEGMHPRVLVDGFEIAKRATLQFLEQFKTNVVVGEEPDKEILKMVARTTLRTKLYEALADQLTDIVVNAVLCIRKPEEAIDLFMVEIMHMRHKFDADTRLVEGLVLDHGSRHPDMKRRAENCFILTSNVSLEYDKSEINAGFFYSNAEQREAMVAAERRQVDERVKKIIELKNKVCAGNDNNFVIINQKGIDPPSLDMLAREGIIALRRAKRRNMERLVLACGGEAINSVENLAPDCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTIEDESVVMGAGSFEVAARQHLINEVKKTVKGRAQLGVEAFANALLVIPKTLAENSGLDTQDVLIALKGAHDRGNIVGLNQHTGEPIDPQMEGIFDNYTVKRQLINSGPVIASQLLLVDEDSLPIPMIPRTLKSVPMSISSHPLLLLLTIVSLSAAASSSAAECPLNFTVLRQFSRGTTASRPDFSDDCQYIRLGLRLVLSQYLKLTGSFLPPVNSSDSCWNAYQSVVDETRPNFNVRTSCGFQTGWISQGCMNITTKSEFERVVSKSALTSVAASCNQSLENGSPCASCTTRLAIVQASFLTGPSIGNVTDCPAYPSIYAAAFANPFGPTDQGTAKCLFSLNPLSSGNSSGKKLNTVVLVVLICCSVAAATAAVVAGGWFFWRKQGKSKKNDRIRRVETGMGSGLESISASTTLVKFTFDEIKRATRNFSRDNIIGRGGYGNVYKGVLSDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCIATTPLEGHQRIIVCDLMKNGSVYDHLFGYSDKRLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDENFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSADSQPFLVTDWAWSLVREQKAMDVVEEGMPELGSPEVVEKYVLIAVLCSHPQLYARPSMDQIVKMLETDLSVPSIPERPISLVAEIDEIERSMSSSGSVQHSGSFGFHGYTLPNDRK 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2148712 2157944 - CmaCh08G003720.1 Cma08g00372 299067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00372 1159 Gene3D Transferase(Phosphotransferase) domain 1 914 1125 - -
Cma08g00372 1159 Pfam Protein kinase domain 834 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00372 1159 Pfam SPARK 562 702 IPR043891 -
Cma08g00372 1159 PRINTS Tailless complex polypeptide 1 (chaperone) signature 410 422 IPR017998 GO:0140662
Cma08g00372 1159 PRINTS Tailless complex polypeptide 1 (chaperone) signature 53 71 IPR017998 GO:0140662
Cma08g00372 1159 PRINTS Tailless complex polypeptide 1 (chaperone) signature 376 398 IPR017998 GO:0140662
Cma08g00372 1159 PRINTS Tailless complex polypeptide 1 (chaperone) signature 83 102 IPR017998 GO:0140662
Cma08g00372 1159 PRINTS Tailless complex polypeptide 1 (chaperone) signature 31 47 IPR017998 GO:0140662
Cma08g00372 1159 SUPERFAMILY GroEL-intermediate domain like 146 407 IPR027410 -
Cma08g00372 1159 Pfam TCP-1/cpn60 chaperonin family 29 523 IPR002423 GO:0005524
Cma08g00372 1159 PANTHER CHAPERONIN 3 523 IPR017998 GO:0140662
Cma08g00372 1159 SUPERFAMILY GroEL equatorial domain-like 11 523 IPR027413 -
Cma08g00372 1159 PANTHER - 3 523 - -
Cma08g00372 1159 Gene3D - 26 523 IPR027413 -
Cma08g00372 1159 ProSitePatterns Chaperonins TCP-1 signature 1. 34 46 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma08g00372 1159 Gene3D - 139 408 IPR027410 -
Cma08g00372 1159 ProSitePatterns Protein kinases ATP-binding region signature. 839 861 IPR017441 GO:0005524
Cma08g00372 1159 CDD STKc_IRAK 839 1109 - -
Cma08g00372 1159 ProSiteProfiles Protein kinase domain profile. 833 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00372 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 958 970 IPR008271 GO:0004672|GO:0006468
Cma08g00372 1159 ProSitePatterns Chaperonins TCP-1 signature 2. 55 71 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma08g00372 1159 CDD TCP1_zeta 6 523 IPR012722 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma08g00372 1159 SUPERFAMILY GroEL apical domain-like 206 381 IPR027409 -
Cma08g00372 1159 SMART serkin_6 833 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00372 1159 SUPERFAMILY Protein kinase-like (PK-like) 810 1109 IPR011009 -
Cma08g00372 1159 TIGRFAM chap_CCT_zeta: T-complex protein 1, zeta subunit 2 523 IPR012722 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma08g00372 1159 Gene3D GroEL 211 372 IPR027409 -
Cma08g00372 1159 Gene3D Phosphorylase Kinase; domain 1 797 912 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00372 Cma-Chr8:2148712 Cma15g00185 Cma-Chr15:892097 0 dispersed
Cma08g00372 Cma-Chr8:2148712 Cma04g00526 Cma-Chr4:2664874 6.93E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68748 PF00118 Cpn60_TCP1 2.40E-162 No_clan Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00372 K09498 - cmax:111497781 1184.47