Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00407 ATGAGGAGAAAATCCAAAACCCTAAGAACGACGATGACCGCAACGAGGAAGAAGATGAAAGGGACATTGACGAGGCACTTGCAGGTCCAGTTAGGGCAGGTTTCTCTCGCCCCTCTCCACCACCAACTTTCCTCTTCCACCGCCGCTTGCTTCCAAGACTTGCCTGAATCTGAAGCAATGGCGACGGTAAACGATTCTGGCGCTCTCCCTTCCTCGTCTACTAACTTTGAGGACAGAGATTTCATTCTTAGTCAGGATTTCTTCTGCACCCCTGACTATATCACTCCGGACAACCAAAATCTGCTGAATGGCGTGGATTGCTACAAGGAAAGCACTCCTTGCCCCAAATCTCCAGAGAAGATTAATACTGTTAAAACTAAGAGAAAAATACGTGACGGTGTTTTAGTACATCCTCTGAGTCCAAGTTTGTCTGGCCGTGAACAAGTTGTGGAGCTAGGAAATGACACTTTTGGAACAGATGATGAAGATATGGAGAAAGAGACAATGGCAATGCCAAAGAAACAAAACTATGTTTCTCAATCTGCTGTTGCTTTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAATCCATACTTGAATGATGCTTCAGACATAGGTGTAGACCCATTTGGTAATCAACGAACAAAATGTGCAGATTTTTTTCCCGCACTGTTTAGTGGAGATGGTCTTTCAAGATATCACACCGATTTTCATGAGATAAAGCAAATAGGAACTGGAAATTTTAGCCGTGTCTTCAAGGTATTGAAGAGAATTGATGGTTGTTTATATGCTGTTAAACAAAGCACAAGATCATTGCATCAAGACATAGAAAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATCGTTGGATACTACTCTTCGTGGTTTGAAAATGAGCAACTCTACATTCAAATGGAACTCTGTGATTGTAGTTTATCCACTGGCAGGTATTCTCACCCGTTCTCTGAGGCTGATGCACTGAAAGCCTTGCATCAGATTGCAAAAGCATTGCTGTTTATGCACGAGAAAGGAGTAGCTCATTTAGACGTGAAACCTGACAATATTTATGTCAAAGATGGTGTTTATAAACTTGGTGATTTTGGATGCGCTACTCTTCTTGATAAAAGCCTACCAATTGAGGAGGGCGATGCACGCTATATGCCTCAAGAAATTCTGAATGAGAGATACGATTATCTTGACAAGGTTGATATATTCTCTTTGGGAGCTGCTATTTATGAGGTTGTGAGAGGTTCGACGTTTCCAGAAACACGTTTCATGAATCTAAAGGAGGGAAAATTGCCACTCTTTCCTTGTCATTCATTGCAATTTCAAAACTTAATCAAGGCGATGGTGGATCCCGACCCAGCACGACGGCCTTCAGCTAGGGAAATTCTTCAGAATCCCATATTTGATAAGGTCAGAAATCATCCAAAATCATAG 1470 42.31 MRRKSKTLRTTMTATRKKMKGTLTRHLQVQLGQVSLAPLHHQLSSSTAACFQDLPESEAMATVNDSGALPSSSTNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDCYKESTPCPKSPEKINTVKTKRKIRDGVLVHPLSPSLSGREQVVELGNDTFGTDDEDMEKETMAMPKKQNYVSQSAVALRCRVMPPPCMKNPYLNDASDIGVDPFGNQRTKCADFFPALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVLKRIDGCLYAVKQSTRSLHQDIERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSTGRYSHPFSEADALKALHQIAKALLFMHEKGVAHLDVKPDNIYVKDGVYKLGDFGCATLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEVVRGSTFPETRFMNLKEGKLPLFPCHSLQFQNLIKAMVDPDPARRPSAREILQNPIFDKVRNHPKS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2334305 2338331 - CmaCh08G004070.1 Cma08g00407 299102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00407 489 ProSitePatterns Protein kinases ATP-binding region signature. 244 267 IPR017441 GO:0005524
Cma08g00407 489 PANTHER BNAA08G27310D PROTEIN 19 396 - -
Cma08g00407 489 PANTHER BNAA08G27310D PROTEIN 409 485 - -
Cma08g00407 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Cma08g00407 489 SUPERFAMILY Protein kinase-like (PK-like) 231 484 IPR011009 -
Cma08g00407 489 Gene3D Transferase(Phosphotransferase) domain 1 317 485 - -
Cma08g00407 489 Gene3D Phosphorylase Kinase; domain 1 228 316 - -
Cma08g00407 489 SMART serkin_6 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00407 489 ProSiteProfiles Protein kinase domain profile. 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00407 489 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 19 396 - -
Cma08g00407 489 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 409 485 - -
Cma08g00407 489 Pfam Protein kinase domain 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00407 Cma-Chr8:2334305 Cma06g00604 Cma-Chr6:2923248 8.75E-22 dispersed
Cma08g00407 Cma-Chr8:2334305 Cma16g01213 Cma-Chr16:9188317 2.66E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68749 PF00069 Pkinase 4.20E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00407 K06632 - csv:101213255 858.596