Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00409 ATGGCGAGCATCAAAGTCCATGGAAGCCCCATTTCCACCGCCACAGCTAGAGTTCTCGCTTGTCTTTACGAGAAAGATCTCGAATACCAGTTTGTTCTTCTCGACATGAAGAATAATGAGCACAAGAAAGAGCCGTTCCTCTCCATCAATCCGTTTGGTCAAGTTCCTGGGTTTCAAGATGGGGATCTCACGATTTTCGAATCAAGGGCCATTACTCAGTACCTGGCCTCCGCCTACGCCAGCAAGGGAAACCAATTGCTGTCGGACGACCCAAAGAAAGCAGCGATCATATCAACATGGATTGAAGTGGAAGGCCACCACTACGACCCTCCGGGGGTAGCGCTGTCGTACGAGTATCTTGTCAAGCCACTATTCGGTCTGGGCGAGACAGATCCCGCCGCCGTGGCCGAGAACGAAGCTAAGTTGGGGAAAGTTCTTGACATCTACGAGAATCAGCTTAGCAAAAGCAAGTTTTTGGCTGGCAATGAGTTCAGTTTGGCAGATCTGCACCACATCCCCAATGTGCACTACTTGTTGGCGACGCCATCGAAGAAGCTGTTCGAGTCACGGCCGCGCGTTAATGCTTGGGTTGCTGAGATCACTGCAAGGCCTTCGTGGGGCAAGGTCCTTGCCATGCGCAATCAGAAATTGTAA 654 51.22 MASIKVHGSPISTATARVLACLYEKDLEYQFVLLDMKNNEHKKEPFLSINPFGQVPGFQDGDLTIFESRAITQYLASAYASKGNQLLSDDPKKAAIISTWIEVEGHHYDPPGVALSYEYLVKPLFGLGETDPAAVAENEAKLGKVLDIYENQLSKSKFLAGNEFSLADLHHIPNVHYLLATPSKKLFESRPRVNAWVAEITARPSWGKVLAMRNQKL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2344840 2346569 + CmaCh08G004090.1 Cma08g00409 299104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00409 217 CDD GST_C_Phi 92 210 IPR034347 -
Cma08g00409 217 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 3 216 - -
Cma08g00409 217 SUPERFAMILY GST C-terminal domain-like 74 214 IPR036282 -
Cma08g00409 217 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Cma08g00409 217 SUPERFAMILY Thioredoxin-like 1 82 IPR036249 -
Cma08g00409 217 SFLD Glutathione Transferase (cytosolic) 1 213 IPR040079 -
Cma08g00409 217 SFLD Main.5: Phi-like 1 213 - -
Cma08g00409 217 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 217 IPR010987 -
Cma08g00409 217 Pfam Glutathione S-transferase, N-terminal domain 6 76 IPR004045 -
Cma08g00409 217 Gene3D - 90 214 - -
Cma08g00409 217 PANTHER GLUTATHIONE S-TRANSFERASE RHO 3 216 - -
Cma08g00409 217 CDD GST_N_Phi 4 76 - -
Cma08g00409 217 Pfam Glutathione S-transferase, C-terminal domain 129 204 IPR004046 -
Cma08g00409 217 Gene3D Glutaredoxin 1 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00409 Cma-Chr8:2344840 Cma16g00767 Cma-Chr16:4206363 6.32E-10 dispersed
Cma08g00409 Cma-Chr8:2344840 Cma08g00410 Cma-Chr8:2346863 9.95E-107 tandem
Cma12g00385 Cma-Chr12:1988809 Cma08g00409 Cma-Chr8:2344840 1.19E-66 transposed
Cma17g01106 Cma-Chr17:7765553 Cma08g00409 Cma-Chr8:2344840 4.05E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00409 K00799 - csv:101212771 399.438