Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00442 ATGGCGGCCACCACATTCTCCTCTCTCATCCTCCTCTCCCTCTACATAACCACCGCTCAAATTCCCCTCTCCGCCGCCTCCGTCTGCACCTCCACCCCCGATCCCTCCTACTGCAAATCCGCCCTCCCCAACCAAACCGGCAATGTCTATTCATACGGCCGCTCATCTTTCAGAAAATCCCTCTCATCGTCGCAAAAGTTTCTCCGGCTAGTCAAGAAGTACCTCCGGTCACGCTCGTCGTTGACGGTTCCCGCCGTCGGAGCACTGGAGGACTGCAAGCTGTTGGCGGGACTGAATATTGATTACTTAACGACGTCGTTCCGGGCGGTGAATACGACGAGTTCGAAGCTGCCGGAGATGAAGGCGGACGATGTACAGAGTTTGTTGAGTGCGATATTGACGAACCAGCAGACGTGTTTGGATGGGCTCAAGGCGACGGCGGGTTCGTGGTCTGTCAAAAATGGCCTTTCCCTCCCACTTGCCTCTGACACCAAGCTGTACTCTATGTCCTTGGCTTTATTTACCAAAGGTTGGGTTCCGAAGAAGAAGAAACGGTCGACATGGACGGCGGCCGGGAGTCTGGGCGGGTTCAGAAACGGAAGAATGTCGCTCAAAATGTCGAACAGAGCGAAAGCGATTTACGAGATGGCGACGCGCCGGAATCTGCTGGAGACTGACGACGGCGGCGACGACCAGATTTCGATCAGAGACATCGTCATTGTCAGCCAAGACGGCAGCGGGAATTTCACGACTATTAACGAAGCGATTGCGGCGGCGCCGAATAACTCTGCTCCGACCGACGGCTATTTCTTGATCTTTGTGTCGGTCGGAGTTTACGAGGAATACGTGTCGATTGCGAAGAATAAGCGGTATTTGATGATGATCGGAGATGGCATTAATCAGACCGTTATCACTGGTAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCTGCCACGTTTGCGGTGGTGGGACCAGGATTTGTAGCGGTAAACATGACGTTCAGAAACACCGCCGGAGCAATAAAGCACCAAGCCGTCGCCGTCCGTAACGGCGCCGACTTATCTACTTTCTATCTCTGCAGCTTCGAAGGCTACCAAGACACCTTATACACTCACTCCCTCCGCCAATTTTACCGCGACTGCGACATCTACGGCACAGTCGACTTCATCTTCGGCAACGCCGCCGTCGTTTTCCAGAACTGCAACATCTACCCTCGTCTTCCTATGGCGAACCAGTTCAACGCCATCACTGCTCAGGGCCGGACCGACCCAAACCAGAACACCGGAACCTCCATCCATAACTGCCGGATCACCGCCGCTGACGACCTCGCGAACAACACCGGCGTCGCCGTGAAAACGTTCCTCGGACGACCGTGGAAGGAATATTCAAGGACGGTGTATTTGCAGAGCTTCATGGATGAGCTAATTAATCCGGCGGGGTGGAGGGCTTGGGATAAGGATTTTGCTTTGAACACTTCGTATTATGCTGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTGAATTGGCTGGGATTTCATTTGATTAATGATACCGATGCTGGGAATTTCACGGCGGCGAACTTTGTCTTGGCGGATGATTGGCTGCCGCAGACCGGCGTTCCGTACACCAGCGGCTTGACGGAGTAG 1665 53.93 MAATTFSSLILLSLYITTAQIPLSAASVCTSTPDPSYCKSALPNQTGNVYSYGRSSFRKSLSSSQKFLRLVKKYLRSRSSLTVPAVGALEDCKLLAGLNIDYLTTSFRAVNTTSSKLPEMKADDVQSLLSAILTNQQTCLDGLKATAGSWSVKNGLSLPLASDTKLYSMSLALFTKGWVPKKKKRSTWTAAGSLGGFRNGRMSLKMSNRAKAIYEMATRRNLLETDDGGDDQISIRDIVIVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVSVGVYEEYVSIAKNKRYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEGYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANNTGVAVKTFLGRPWKEYSRTVYLQSFMDELINPAGWRAWDKDFALNTSYYAEFGNFGPGSNTSERVNWLGFHLINDTDAGNFTAANFVLADDWLPQTGVPYTSGLTE 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2494265 2496238 + CmaCh08G004420.1 Cma08g00442 299137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00442 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 176 IPR035513 -
Cma08g00442 554 SMART PMEI_2 20 173 IPR006501 GO:0004857
Cma08g00442 554 Pfam Plant invertase/pectin methylesterase inhibitor 26 173 IPR006501 GO:0004857
Cma08g00442 554 PANTHER PECTINESTERASE 14 552 - -
Cma08g00442 554 Pfam Pectinesterase 239 537 IPR000070 GO:0030599|GO:0042545
Cma08g00442 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 176 IPR035513 -
Cma08g00442 554 CDD PMEI-like_3 27 178 - -
Cma08g00442 554 Gene3D - 233 552 IPR012334 -
Cma08g00442 554 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Cma08g00442 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Cma08g00442 554 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 14 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00604 Cma-Chr2:3612270 Cma08g00442 Cma-Chr8:2494265 0 dispersed
Cma04g01458 Cma-Chr4:7415195 Cma08g00442 Cma-Chr8:2494265 3.96E-180 dispersed
Cma08g00442 Cma-Chr8:2494265 Cma20g01115 Cma-Chr20:8798768 0 dispersed
Cma01g01640 Cma-Chr1:11242300 Cma08g00442 Cma-Chr8:2494265 0 transposed
Cma17g01065 Cma-Chr17:7621802 Cma08g00442 Cma-Chr8:2494265 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00442 K01051 - csv:101205321 983.015