Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00444 ATGGCTGAAATCAGATTTCAATTCAGGACCCATTTGCGGCGAGTCGCCTCGTCGGGCCGCAACCGGTTTCCGATTAATTTCCCTCTCTTTAACGAATACAAGAGTCCCCGCACCAATCGACTTGACTTTCCTCTCTTCTTGTTCTGGCCATGCGACTCTGGTTTTCCGAGATCCGCCTCTCGAAAGAGGGTTATTTTGGTGATTTTTGCGCTCAAATCACTGTTTATTCTTCTGGGTATTTTATTAAATACTGCCATGGCTACCGATTCTCATTCCCCTACTCCGAGGGCTCTTCTCTGTAATGCTGGAGCTGGTGCCGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTTATCAAGACTAGATTTCAGGTTCATGGACTGCCAAACATTGGAAAAGGGAGTCTCATACTTGGTAGTCTGAAACAAATTGCTCATGCGGAGGGGCTGCGTGGAATGTATAGAGGACTCTCACCTACTGTGCTTGCACTACTTCCTAACTGGGCTGTTTATTTCACAATCTATGAACAGCTTAAATGCTTTCTTGGCTCTGATGATGAACGGCATCAGCTTTCAATAGGTGCTAATATGTTGGCTGCTTCTGGTGCTGGGGCTGCTACAGCTATTGCAACTAATCCTCTATGGGTTGTTAAGACCAGACTTCAGACGCAGGGAATGAAATCTGGTGTCCTACCGTATAGAAACACAGTTTCTGCCTTGAAGAGAATAGCCTATGAAGAAGGCATCCGTGGATTGTACAGTGGTCTTGTGCCTGCTCTGGCTGGTGTTAGTCACGTCGCGATCCAGTTTCCGACATACGAGAAAATAAAAGGCTATTTGGCTAGCAGAGATAATACGACGACGGATAAACTCTCCGCACGTGACGTTGCAGTCGCCTCATCTGTCTCCAAGATATTCGCGTCCACATTGACTTATCCACATGAGGTTGTACGTTCCAGGCTTCAGGAACAAGGGTTCCACTCCGAGAAGCGTTATTCGGGCGTAACCGATTGCGTAAAGAAAGTGTTTCGGCAAGATGGTCTCCCCGGTTTCTATCGAGGGTGCACAGCCAACCTTCTTAGGACGACACCTGCAGCTGCCATCACATTTACCAGCTTTGAAATGATCCACCGTTCTCTTCTCAACTTATTTCCTTCTGATCCACACCAACACACATTATGA 1191 47.27 MAEIRFQFRTHLRRVASSGRNRFPINFPLFNEYKSPRTNRLDFPLFLFWPCDSGFPRSASRKRVILVIFALKSLFILLGILLNTAMATDSHSPTPRALLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLILGSLKQIAHAEGLRGMYRGLSPTVLALLPNWAVYFTIYEQLKCFLGSDDERHQLSIGANMLAASGAGAATAIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALKRIAYEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKGYLASRDNTTTDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVTDCVKKVFRQDGLPGFYRGCTANLLRTTPAAAITFTSFEMIHRSLLNLFPSDPHQHTL 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2502721 2506108 - CmaCh08G004440.1 Cma08g00444 299139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00444 396 ProSiteProfiles Solute carrier (Solcar) repeat profile. 194 282 IPR018108 -
Cma08g00444 396 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 86 395 IPR044712 GO:0006862|GO:0055085
Cma08g00444 396 Gene3D Mitochondrial carrier domain 102 385 IPR023395 -
Cma08g00444 396 SUPERFAMILY Mitochondrial carrier 99 378 IPR023395 -
Cma08g00444 396 PRINTS Mitochondrial carrier protein signature 114 128 IPR002067 GO:0055085
Cma08g00444 396 PRINTS Mitochondrial carrier protein signature 101 114 IPR002067 GO:0055085
Cma08g00444 396 PRINTS Mitochondrial carrier protein signature 303 325 IPR002067 GO:0055085
Cma08g00444 396 PRINTS Mitochondrial carrier protein signature 159 179 IPR002067 GO:0055085
Cma08g00444 396 PRINTS Mitochondrial carrier protein signature 209 227 IPR002067 GO:0055085
Cma08g00444 396 Pfam Mitochondrial carrier protein 101 186 IPR018108 -
Cma08g00444 396 Pfam Mitochondrial carrier protein 193 284 IPR018108 -
Cma08g00444 396 Pfam Mitochondrial carrier protein 300 384 IPR018108 -
Cma08g00444 396 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 86 395 - -
Cma08g00444 396 ProSiteProfiles Solute carrier (Solcar) repeat profile. 96 184 IPR018108 -
Cma08g00444 396 ProSiteProfiles Solute carrier (Solcar) repeat profile. 294 382 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00714 Cma-Chr3:5782219 Cma08g00444 Cma-Chr8:2502721 3.42E-17 dispersed
Cma08g00444 Cma-Chr8:2502721 Cma10g00005 Cma-Chr10:17241 8.32E-06 dispersed
Cma15g00924 Cma-Chr15:4852185 Cma08g00444 Cma-Chr8:2502721 1.60E-125 transposed
Cma17g01062 Cma-Chr17:7600293 Cma08g00444 Cma-Chr8:2502721 9.67E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00444 K15115 - csv:101204681 530.02