Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00449 ATGGCATATGACGGCGGTGGATGCAAGAACAAAATCACTACCTTTATGCTGTTATCTTTGTTTCTAGCCGCCATGGCGGTGGCGGCCGACAATGTCAATGACAATGCTAGTGGTGGCGGCACGGCGGGGGATGTGATGTCCACCGCAGCGGTTAAGTCTCTGTGTCAACCGACATCTTATCGTGAAACCTGTGAGAAAGTTCTGGTGAATGCAACTCGCGACTCAAAAGACCCACGAGACTTGATCAAGGCAGGATTCCATTATGCCGTTGATCAACTCAAATTGGCCATTGCAGATTCCCCCACTTTGAAAGAATCAGCTACTGACCCAATGGCTAAGCAAGCGGTTGATGCGTGCGAAGAGCTCATAGATCATGCGGTTGACGATCTTTTAACGTCATTTGATAAAGTCACCGATAGTTTTACTGTGAATAGAATCGATAATTATATTGAAACTCTTAGGCTTTGGTTGAGTGGCGCATTAACGTATCAAGAAACTTGTTTGGATGGCTTCAAGAATGTCCCTGGTGATACCGGGGAAAAGATGACCAATTTGTTGAAGACGTCTAGAGAAATGACCATCAATGGGTTGTCGATGGTGGGTGAGGTTACAGCCATTGTGACCTCTTTGTGGCGTGCATTGGGGCTTCAATCATTTGGGAGACAACTCCGAGTAGACGAGTACGATGAGGAAGAGTCATCATGGGTCAATGATAGGCGAGGCCTACTCCAAACCACTGGCGCTAACGTTAATGCCGATGTGGTAGTGGCTAAAGATGGAAGTGGAAAGTATACGACAATCAATGAAGCTCTTCAAGCGGTCCCGAAGTTTAGCAATAAAACCTTTATTATTTATGTTAAGGAAGGAGTTTATGAAGAGCAAGTATTGGTTGACAAATCCATGACCTATGTCATGATGATTGGAGATGGCATGGATAAGACCAAGATCACTGGTAGCAAGAATTTCAAGGATGGAACAAACACATTCAAAACTGCTACAGTTGCGGTGGATGGGGTCAACTTCATTGGAAAAGACTTATGGTTCGAGAATTCGGCTGGGGCTGAAAAACATCAGGCCGTGGCACTTCGAGTTCAATCCGACATGTCCATCTTCTATAATTGTAGAATGGATGGCTATCAAGATACTCTCTACGCTCACACCCATCGTCAATTCTACCGAGATTGCATCATCACTGGCACCATCGACTTTATCTTTGGCAACGCTGCTGTCGTGTTCCAGAATTGTAAGATCATTGTGAGGAAGCCATTAGAGAATCAACAATGCATTGTCACTGCCCAAGGCCGAACCGAGAGGAAAGAACCCACCGGTATCATACTCCAAAACTGCGTCATCTCTTCCGACCCTGAGTACTTTCCTGTTCGCCATATCAGCAAGGCCTACCTCGGCCGCCCATGGAAGGAATACTCAAGAACCATCATCATGCAATGCCAAATCGACGACTTGATACAGCCTGAAGGGTGGCTTCCATGGGAAGCCGATTTTGGTCTCAAGACTCTGTTTTACTCAGAGTTCGAAAATAGGGGACCCGGTGCAGCAACGCAGAATCGAGTTAAGTGGAGGGGAATTAAACAAATCTCAGCAAAGCACGCCCTTGACTTCACCCCTGCATTCTTTATTCATGGTAATAGTTGGATCAAGCGCACTGGAGTACCATATAGTCCTGGCATGATGGTAGTGTAA 1701 46.03 MAYDGGGCKNKITTFMLLSLFLAAMAVAADNVNDNASGGGTAGDVMSTAAVKSLCQPTSYRETCEKVLVNATRDSKDPRDLIKAGFHYAVDQLKLAIADSPTLKESATDPMAKQAVDACEELIDHAVDDLLTSFDKVTDSFTVNRIDNYIETLRLWLSGALTYQETCLDGFKNVPGDTGEKMTNLLKTSREMTINGLSMVGEVTAIVTSLWRALGLQSFGRQLRVDEYDEEESSWVNDRRGLLQTTGANVNADVVVAKDGSGKYTTINEALQAVPKFSNKTFIIYVKEGVYEEQVLVDKSMTYVMMIGDGMDKTKITGSKNFKDGTNTFKTATVAVDGVNFIGKDLWFENSAGAEKHQAVALRVQSDMSIFYNCRMDGYQDTLYAHTHRQFYRDCIITGTIDFIFGNAAVVFQNCKIIVRKPLENQQCIVTAQGRTERKEPTGIILQNCVISSDPEYFPVRHISKAYLGRPWKEYSRTIIMQCQIDDLIQPEGWLPWEADFGLKTLFYSEFENRGPGAATQNRVKWRGIKQISAKHALDFTPAFFIHGNSWIKRTGVPYSPGMMVV 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2527124 2529012 - CmaCh08G004490.1 Cma08g00449 299144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00449 566 PANTHER PECTINESTERASE 15 563 - -
Cma08g00449 566 SUPERFAMILY Pectin lyase-like 250 562 IPR011050 -
Cma08g00449 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 203 IPR035513 -
Cma08g00449 566 CDD PMEI-like_3 53 200 - -
Cma08g00449 566 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Cma08g00449 566 PANTHER PECTINESTERASE 15 563 - -
Cma08g00449 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 201 IPR035513 -
Cma08g00449 566 Pfam Plant invertase/pectin methylesterase inhibitor 50 196 IPR006501 GO:0004857
Cma08g00449 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Cma08g00449 566 SMART PMEI_2 46 199 IPR006501 GO:0004857
Cma08g00449 566 Gene3D - 247 563 IPR012334 -
Cma08g00449 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01533 Cma-Chr6:9645268 Cma08g00449 Cma-Chr8:2527124 0 dispersed
Cma08g00449 Cma-Chr8:2527124 Cma08g01239 Cma-Chr8:7592616 0 dispersed
Cma08g00449 Cma-Chr8:2527124 Cma06g01517 Cma-Chr6:9589741 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00449 K01051 - csv:101212686 774.622