Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00472 ATGTCAGCCATGAAAGATACCGGAGCTCTGGACTTCACCGCCGATAGAGTGCTCGCAAAGGAGTTCATCGCGAACTTTGCCGACGCCAATGGCGACGCGAAGTATTTAAACATTCTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAAATCGATCTCGAGGATGTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAGACGTCTTACAGAGAACACTCGACGATATATTGGAATCTTTGCCGATGCGATCGATGAGCTCATGCCAGAGCCAACAGAGGCGTTTATAGATGACGATCATGACATATTAATGACTCAAAGGTCCGATGATGGACCGGATACTGCTGATAACCCTGACCCACGCCAAAAAATGCCTCCAGAAATTAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAAGCTTCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACGCGCTGTTCAGATGTAAAGCCATTGATGCAGGTGGCTGTTTATACATGCGAAGACTGTGGTTTTGAGATATATCAGGAGGTAACAGCTCGAGTCTTCATGCCTTTATTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACCTAATTCTTCAACTTAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCCAAAATTCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTCGAACTATCAGGGATTTTTCTTCCTATTCCCTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCCGAGGATGGTGATATTTACAATAAACTTTCAAGGTCGTTGGCACCTGAAATTTTTGGGCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTGGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCGAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGTGTCTACACGACTGGCAAAGGTAGCAGTGGGGTTGGTCTAACGGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTATTAGCTGATATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACTGTGAGCATTGCCAAGGCTGGGATCACCACTTCTCTTAATGCCAGGACTGCTGTCCTTGCTGCAGCCAATCCAGCATGGGGAAGATACGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGATATGGATAACGATCTTGAAATGGCTAGACATGTTGTTTATGTTCATCAGAATAGAGAATCTCCTGCCCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCAGCTGCGAGAAGATTGTCTCCTTACGTTCCCAAGGATCTAGAGGAGTATATTGCCAGTGCCTATTCCAGTATTCGACAGGAAGAAGCTAAATCTAACACTCCACATTCATATACCACAGTCAGAACTCTACTAAGCATTCTCCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCTGAGACTGTGGTTCAGAGCGATGTCGATGAGGCTCTACGGTTAATGCAAATGTCAAAATTTTCTCTGTACTCGGATGACCGTCAAAAATCCGGTCTAGATGCTATCTCAGATATCTATTCAATCCTGCGTGATGAAGCTGCCAGAACGAATAAAATGGATGTGAGCTATGCACATGCCCTTAACTGGATTTCTAGGAAGCCCAAAACAGTGAAGCGTTTCGGTTGTGTGTGGAAAGTGAAAATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACTTCTCCTGTTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGATTACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCAGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGTTGGTATCACCTATAGCTGGTGGGAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTGACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTACTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCCTCCTCCTCTGCCTGAAGAAGACAGCATACTCAAAGAGCCTTGCTTGGAGATATGTCCTAATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAG 2916 43.69 MSAMKDTGALDFTADRVLAKEFIANFADANGDAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRLTENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTADNPDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLSRSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVVQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKPKTVKRFGCVWKVKMKPVALLLHPPATISSAALRFSSKSHLRKRPLNFSCFAVQSESTKVEVSSKPDYKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVPPPLPEEDSILKEPCLEICPNATRRREVLSKMSATQCPKA 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2658734 2668307 + CmaCh08G004720.1 Cma08g00472 299167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 Pfam MCM N-terminal domain 20 138 IPR027925 -
Cma08g00472 971 MobiDBLite consensus disorder prediction 108 127 - -
Cma08g00472 971 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 695 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 Pfam MCM OB domain 149 279 IPR033762 -
Cma08g00472 971 Gene3D - 16 106 - -
Cma08g00472 971 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 CDD MCM7 335 642 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 653 IPR027417 -
Cma08g00472 971 Pfam Beta-carotene isomerase D27-like, C-terminal 855 937 IPR025114 GO:0005506
Cma08g00472 971 SMART mcm 145 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 Gene3D - 149 277 IPR012340 -
Cma08g00472 971 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma08g00472 971 SUPERFAMILY Nucleic acid-binding proteins 19 300 IPR012340 -
Cma08g00472 971 Gene3D - 176 230 - -
Cma08g00472 971 Gene3D - 317 649 IPR027417 -
Cma08g00472 971 Pfam MCM P-loop domain 320 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 42 695 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00472 K02210 MCM7, CDC47; DNA replication licensing factor MCM7 [EC:5.6.2.3] - csv:101219064 1319.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01779 Cma-Chr2:9907205 Cma08g00472 Cma-Chr8:2658734 7.09E-37 dispersed
Cma08g00472 Cma-Chr8:2658734 Cma19g00684 Cma-Chr19:7093951 2.65E-107 dispersed
Cma19g00014 Cma-Chr19:83796 Cma08g00472 Cma-Chr8:2658734 1.23E-34 dispersed
Cma17g01031 Cma-Chr17:7473100 Cma08g00472 Cma-Chr8:2658734 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g406 Blo05g00247 . Bda04g00681 . . Bpe06g00495 . . Cmo08g00462 . . . . . Sed09g1301 . . Bhi09g00827 Tan06g0723 Cmetu01g2608 . Hepe03g1830 . . Cla09g00463 Cam09g0501 Cec09g0500 Cco09g0491 Clacu09g0503 . Cre09g0482 Cone17ag0408 Cone20ag1004 . . Lsi02g02485 Csa07g01915 . Cme01g02190 . . . . . . Bma09g00799 . . . . Cma08g00472 . Car08g00381 . . . . . . . . . . . . . . . . . . . Chy01g01762 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma09g01213 . 106 793 Core DNA Replication Machinery Family AT4G14700 67.2 9.8e-271 930.2
Cma09g01213 . 73 793 Core DNA Replication Machinery Family AT4G12620 67.7 1.1e-282 969.9
Cma12g00526 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 1.3e-142 503.4
Cma04g01092 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 4.2e-156 548.5
Cma17g00438 . 92 588 Core DNA Replication Machinery Family AT4G29910 58.3 3.6e-163 572.4
Cma05g00856 . 1 261 Core DNA Replication Machinery Family AT1G26840 67.8 3.7e-92 335.5
Cma06g01701 CST 1031 1774 Core DNA Replication Machinery Family AT1G79150 56.9 8.6e-230 794.3
Cma06g01755 . 218 1156 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1344.3
Cma14g01060 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1337.0
Cma07g00117 CST 1 572 Core DNA Replication Machinery Family AT5G46280 81.5 3.2e-268 921.4
Cma03g01388 CST 1 224 Core DNA Replication Machinery Family AT5G46280 54.4 9.2e-66 248.8
Cma19g00684 . 20 884 Core DNA Replication Machinery Family AT2G16440 75.1 0.0e+00 1149.4
Cma11g01087 . 107 738 Core DNA Replication Machinery Family AT2G16440 64.9 3.9e-262 901.7
Cma12g01169 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.6 0.0e+00 1116.3
Cma07g00004 . 523 1345 Core DNA Replication Machinery Family AT5G44635 72.8 0.0e+00 1189.9
Cma17g01031 . 8 719 Core DNA Replication Machinery Family AT4G02060 85.8 0.0e+00 1221.8
Cma08g00472 . 11 690 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1152.9
Cma20g00352 . 30 509 Core DNA Replication Machinery Family AT2G29680 59.8 1.1e-158 557.4
Cma20g00352 . 30 479 Core DNA Replication Machinery Family AT1G07270 59.1 2.4e-144 509.6
Cma08g00225 . 238 830 Core DNA Replication Machinery Family AT3G25100 76.1 4.4e-260 894.4
Cma17g01271 . 241 833 Core DNA Replication Machinery Family AT3G25100 76.6 2.2e-256 882.1
Cma06g00352 . 39 805 Core DNA Replication Machinery Family AT3G09660 74.4 0.0e+00 1109.7
Cma19g00466 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.3 1.0e-286 983.0
Cma20g00753 . 1 398 Core DNA Replication Machinery Family AT2G20980 55.0 8.3e-114 407.9
Cma09g00770 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.1 6.7e-261 897.9
Cma08g00461 CST 25 146 Core DNA Replication Machinery Family AT4G02110 56.5 4.5e-38 157.9
Cma08g00673 . 1 192 Core DNA Replication Machinery Family AT1G80190 66.5 5.2e-72 268.1
Cma07g01186 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 3.1e-61 231.9
Cma04g02907 . 1103 1270 Core DNA Replication Machinery Family AT1G19080 61.3 1.7e-53 206.5
Cma04g02907 . 1103 1270 Core DNA Replication Machinery Family AT3G55490 61.3 1.7e-53 206.5
Cma14g02049 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.7e-52 201.4
Cma02g00514 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1763.4
Cma18g00719 . 2 620 Core DNA Replication Machinery Family AT1G67630 63.8 1.8e-224 776.2
Cma08g00169 . 498 940 Core DNA Replication Machinery Family AT1G67320 65.3 1.8e-182 636.3
Cma09g01290 . 39 477 Core DNA Replication Machinery Family AT5G41880 65.3 1.1e-175 613.6
Cma07g00817 . 1 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1807.7
Cma14g00418 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.6 1.7e-205 712.6
Cma08g00169 . 498 940 Core DNA Replication Machinery Family AT1G67320 65.3 1.8e-182 636.3
Cma02g01335 . 1 2094 Core DNA Replication Machinery Family AT1G08260 70.4 0.0e+00 2946.0
Cma02g01335 . 9 2200 Core DNA Replication Machinery Family AT2G27120 67.4 0.0e+00 2919.4
Cma01g00753 . 529 1044 Core DNA Replication Machinery Family AT5G22110 65.8 1.5e-192 669.8
Cma02g01296 . 1 928 Core DNA Replication Machinery Family AT5G22010 62.4 3.1e-305 1045.0
Cma20g00138 CCT,ECH 67 182 Core DNA Replication Machinery Family AT5G22010 64.1 7.2e-36 150.2
Cma16g01020 . 1 333 Core DNA Replication Machinery Family AT1G63160 89.5 7.3e-172 600.5
Cma03g00215 . 1 335 Core DNA Replication Machinery Family AT5G27740 83.3 1.7e-166 582.8
Cma01g01369 . 1 336 Core DNA Replication Machinery Family AT1G21690 80.7 6.4e-152 534.3
Cma15g00666 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.3 6.5e-153 537.7
Cma04g02374 . 1 363 Core DNA Replication Machinery Family AT1G77470 73.0 2.1e-148 522.7
Cma05g01409 . 26 604 Core DNA Replication Machinery Family AT2G06510 68.8 1.8e-245 845.9
Cma06g00602 CST 34 701 Core DNA Replication Machinery Family AT2G06510 52.2 6.2e-201 698.0
Cma16g01216 CST 34 661 Core DNA Replication Machinery Family AT2G06510 52.1 9.3e-189 657.5
Cma11g00209 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.3 3.8e-243 838.2
Cma06g00602 CST 10 808 Core DNA Replication Machinery Family AT5G45400 51.1 6.3e-228 788.1
Cma16g01216 CST 10 661 Core DNA Replication Machinery Family AT5G45400 54.5 1.0e-206 717.6
Cma11g00209 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.4 3.6e-236 815.1
Cma06g00602 CST 5 822 Core DNA Replication Machinery Family AT4G19130 53.1 2.1e-230 796.2
Cma16g01216 CST 5 661 Core DNA Replication Machinery Family AT4G19130 58.8 2.8e-214 742.7
Cma11g01183 . 1 376 Core DNA Replication Machinery Family AT5G26680 85.7 1.6e-184 642.9
Cma14g01944 . 1 1102 Core DNA Replication Machinery Family AT1G08840 51.8 8.7e-296 1013.8
Cma14g01473 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.3 2.4e-115 412.5
Cma20g00522 . 44 804 Core DNA Replication Machinery Family AT1G08130 68.3 1.2e-292 1003.0
Cma20g00522 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.4 8.0e-239 823.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012430 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00472 Cma_Chr08 FPKM 3.510689 3.572322 3.8363 4.312168 15.954146 16.668022 15.641215 4.894525 4.838159 5.593353