Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00472 ATGTCAGCCATGAAAGATACCGGAGCTCTGGACTTCACCGCCGATAGAGTGCTCGCAAAGGAGTTCATCGCGAACTTTGCCGACGCCAATGGCGACGCGAAGTATTTAAACATTCTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAAATCGATCTCGAGGATGTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAGACGTCTTACAGAGAACACTCGACGATATATTGGAATCTTTGCCGATGCGATCGATGAGCTCATGCCAGAGCCAACAGAGGCGTTTATAGATGACGATCATGACATATTAATGACTCAAAGGTCCGATGATGGACCGGATACTGCTGATAACCCTGACCCACGCCAAAAAATGCCTCCAGAAATTAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAAGCTTCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACGCGCTGTTCAGATGTAAAGCCATTGATGCAGGTGGCTGTTTATACATGCGAAGACTGTGGTTTTGAGATATATCAGGAGGTAACAGCTCGAGTCTTCATGCCTTTATTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACCTAATTCTTCAACTTAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCCAAAATTCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTCGAACTATCAGGGATTTTTCTTCCTATTCCCTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCCGAGGATGGTGATATTTACAATAAACTTTCAAGGTCGTTGGCACCTGAAATTTTTGGGCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTGGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCGAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGTGTCTACACGACTGGCAAAGGTAGCAGTGGGGTTGGTCTAACGGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTATTAGCTGATATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACTGTGAGCATTGCCAAGGCTGGGATCACCACTTCTCTTAATGCCAGGACTGCTGTCCTTGCTGCAGCCAATCCAGCATGGGGAAGATACGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGATATGGATAACGATCTTGAAATGGCTAGACATGTTGTTTATGTTCATCAGAATAGAGAATCTCCTGCCCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCAGCTGCGAGAAGATTGTCTCCTTACGTTCCCAAGGATCTAGAGGAGTATATTGCCAGTGCCTATTCCAGTATTCGACAGGAAGAAGCTAAATCTAACACTCCACATTCATATACCACAGTCAGAACTCTACTAAGCATTCTCCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCTGAGACTGTGGTTCAGAGCGATGTCGATGAGGCTCTACGGTTAATGCAAATGTCAAAATTTTCTCTGTACTCGGATGACCGTCAAAAATCCGGTCTAGATGCTATCTCAGATATCTATTCAATCCTGCGTGATGAAGCTGCCAGAACGAATAAAATGGATGTGAGCTATGCACATGCCCTTAACTGGATTTCTAGGAAGCCCAAAACAGTGAAGCGTTTCGGTTGTGTGTGGAAAGTGAAAATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACTTCTCCTGTTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGATTACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCAGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGTTGGTATCACCTATAGCTGGTGGGAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTGACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTACTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCCTCCTCCTCTGCCTGAAGAAGACAGCATACTCAAAGAGCCTTGCTTGGAGATATGTCCTAATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAG 2916 43.69 MSAMKDTGALDFTADRVLAKEFIANFADANGDAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRLTENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTADNPDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLSRSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVVQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKPKTVKRFGCVWKVKMKPVALLLHPPATISSAALRFSSKSHLRKRPLNFSCFAVQSESTKVEVSSKPDYKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVPPPLPEEDSILKEPCLEICPNATRRREVLSKMSATQCPKA 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2658734 2668307 + CmaCh08G004720.1 Cma08g00472 299167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 Pfam MCM N-terminal domain 20 138 IPR027925 -
Cma08g00472 971 MobiDBLite consensus disorder prediction 108 127 - -
Cma08g00472 971 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 695 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 Pfam MCM OB domain 149 279 IPR033762 -
Cma08g00472 971 Gene3D - 16 106 - -
Cma08g00472 971 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 CDD MCM7 335 642 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma08g00472 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 653 IPR027417 -
Cma08g00472 971 Pfam Beta-carotene isomerase D27-like, C-terminal 855 937 IPR025114 GO:0005506
Cma08g00472 971 SMART mcm 145 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 Gene3D - 149 277 IPR012340 -
Cma08g00472 971 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma08g00472 971 SUPERFAMILY Nucleic acid-binding proteins 19 300 IPR012340 -
Cma08g00472 971 Gene3D - 176 230 - -
Cma08g00472 971 Gene3D - 317 649 IPR027417 -
Cma08g00472 971 Pfam MCM P-loop domain 320 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma08g00472 971 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 42 695 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01779 Cma-Chr2:9907205 Cma08g00472 Cma-Chr8:2658734 7.09E-37 dispersed
Cma08g00472 Cma-Chr8:2658734 Cma19g00684 Cma-Chr19:7093951 2.65E-107 dispersed
Cma19g00014 Cma-Chr19:83796 Cma08g00472 Cma-Chr8:2658734 1.23E-34 dispersed
Cma17g01031 Cma-Chr17:7473100 Cma08g00472 Cma-Chr8:2658734 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00472 K02210 - csv:101219064 1319.29