Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00480 ATGGAGCTCGATTTAATTTGGTCGCAATTTGATATGTTTTCGACGTCGTCTTCCCCAATTCAAAACCCCGTTATCGATCCCGAGAATTTGGAGATTTTGAATGCATGGCTTACATCGTCCAGTCAGCTCATCAATGACGAGTTATCAGAGTTGAATTTAGAAGAGCAGAAACCTCGACAAAAAACTGTTAAATCTAACCCCTTGTCGAAAACAAAGAAGACGAATCAAAAGAAGAAAGAGCAAGAACAACGATACATGTTCATGACGAAGAGCAAAGTTGATCATTTAGAAGATGGATATAGATGGAGAAAGTACGGGCAAAAAGTTGTAAAAAATAGCCCTTATCCTAGGAGTTATTATCGGTGTACTAGTGTAGCATGTAACGTAAAGAAACGAGTGGAGAGATGCTTGAAAGATCCCATAATTGTTATCACAACTTACGAAGGCCAACACACTCACTCTACCCCTGTCATGGCTCGATCAACCTTCTTTCCTCTGCCTATCTCTACCTCTCTCTACGAGGGTTCCACATCGTTCACCACCACCACTCCCCATCTCTTTCACAACCAAAACGTTCATAATTTAAATTTTGCCCGTCACCCTAATGACTTTGTGGCACCAATCAAGTTTCATGGGAGTTACCGTTTCCGTTGGCTGAAGGCGAATGCGAATGCCATCCCAGGATTGATTCAATCGTCGGTCGCCATCTCCGATGAACACAAATTCGATCATTAA 735 42.04 MELDLIWSQFDMFSTSSSPIQNPVIDPENLEILNAWLTSSSQLINDELSELNLEEQKPRQKTVKSNPLSKTKKTNQKKKEQEQRYMFMTKSKVDHLEDGYRWRKYGQKVVKNSPYPRSYYRCTSVACNVKKRVERCLKDPIIVITTYEGQHTHSTPVMARSTFFPLPISTSLYEGSTSFTTTTPHLFHNQNVHNLNFARHPNDFVAPIKFHGSYRFRWLKANANAIPGLIQSSVAISDEHKFDH 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2725379 2726821 + CmaCh08G004800.1 Cma08g00480 299175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00480 244 SUPERFAMILY WRKY DNA-binding domain 88 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma08g00480 244 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 45 185 - -
Cma08g00480 244 Gene3D WRKY domain 79 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma08g00480 244 Pfam WRKY DNA -binding domain 97 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma08g00480 244 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 185 IPR044810 GO:0003700
Cma08g00480 244 ProSiteProfiles WRKY domain profile. 91 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma08g00480 244 MobiDBLite consensus disorder prediction 55 83 - -
Cma08g00480 244 SMART WRKY_cls 96 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00279 Cma08g00480 CCT
Cma08g00480 Cma14g00940 CCT
Cma08g00480 Cma14g00940 ECH
Cma01g00279 Cma08g00480 ECH
Cma08g00480 Cma17g01021 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00480 Cma-Chr8:2725379 Cma14g01581 Cma-Chr14:11876011 5.54E-43 dispersed
Cma01g00279 Cma-Chr1:1325486 Cma08g00480 Cma-Chr8:2725379 6.89E-45 wgd
Cma14g00940 Cma-Chr14:4878868 Cma08g00480 Cma-Chr8:2725379 7.61E-43 wgd
Cma17g00379 Cma-Chr17:2109793 Cma08g00480 Cma-Chr8:2725379 1.71E-44 wgd
Cma17g01021 Cma-Chr17:7412849 Cma08g00480 Cma-Chr8:2725379 1.14E-80 wgd
Cma08g00480 Cma-Chr8:2725379 Cma08g01289 Cma-Chr8:7800804 2.37E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35497 PF03106 WRKY 3.90E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00480 - - cmos:111461005 373.244