Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00490 ATGGTGGCTGAAACTAAGGTTGTCTTCTGTTCGAAGAGCCTCCCTGTTTTGGAGGTCCCCTATTTCGGTAAAGAGGCTCATCTTGTTGATGAAATGAAGTCCATCGACGGTGCGGTTCCGGTTGATCCGACTCTCGATCGTGTTCGCGCTTCCGAATCGGTTTGTTCGAGTTCTCAATCGGGTGTGAAGCAAATTCCAGATACCGACGTCGATTCGATGGAGCAGAGGGAATTTCCAAGTCTCCGGTCGGGGAGCTTTGCTGATATTGGACCTAGGAGAGACATGGAGGATGAACACATAAGGATTGACGATCTGTGTACACATTTAGGCTCGCTCTTTAAGTTTTCTAAGCCAAGTGGTTTCTATGGGGTGTTTGATGGACATGGAGGACCTGAAGCAGCAGCTTATATAAGAAAGAATATTCTTAGACTCTTTTTTGAAGATGTTAGGTTTCCTCACATGCCTGATGTTGATGAACTCCGGCCGGAGGAGATTGAAAATTTCTTACGAGAAGCATTTCTTCTGGCCGATCAAGCTTTGGCCGATGATTCTGGGATTAGTAATTTGTCTGGGACGACGGCCCTCACTGCTCTTGTGCTTGGAAGGCTTCTAATGGTGGCTAATGTTGGAGATTGCCGGGCTGTTCTTAGTCGGAAGGGAGAGGCAGTAGATATGTCTCAAGACCACAGGCCAATTTATTCACCGGAGAAGGAACGAGTAGAAGAGTTGGGTGGCTTCGTCGATGGTGGCTATCTTAACGGCCTTTTATCAGTTTCCAGGGCCTTGGGTGATTGGGACATGAAGCTCCTCCCCCATGGTTCTCCTTCACCCCTCATTGCAGAACCAGAATGCAGGCAGGTGGTTCTAACAGAGGAGGATGAGTTCTTAATCATAGCCTGCGATGGGATTTGGGACGTGATGTCAAGCCAGCATGCAGTCGATGTAGTTCGCCGTGGACTTCAGCGACATGACAACCCTGAGCGTTGCGCTCGAGATCTCGTCCTGCGGGCTTTGGGATTAGACTCATTCGATAATCTCACCGTTGTTATTGTTTGCTTCTCTAGTTTCCATAGGGACAACTCTCCACAACCACAGCAACGAAAATTGAGATACTGCAGCCTCTCTGCTCAAGCCCTTTGTAGCTTGCAGAGATCGTTGGATAAGAGTGGATGCCAATGA 1179 48.43 MVAETKVVFCSKSLPVLEVPYFGKEAHLVDEMKSIDGAVPVDPTLDRVRASESVCSSSQSGVKQIPDTDVDSMEQREFPSLRSGSFADIGPRRDMEDEHIRIDDLCTHLGSLFKFSKPSGFYGVFDGHGGPEAAAYIRKNILRLFFEDVRFPHMPDVDELRPEEIENFLREAFLLADQALADDSGISNLSGTTALTALVLGRLLMVANVGDCRAVLSRKGEAVDMSQDHRPIYSPEKERVEELGGFVDGGYLNGLLSVSRALGDWDMKLLPHGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQHAVDVVRRGLQRHDNPERCARDLVLRALGLDSFDNLTVVIVCFSSFHRDNSPQPQQRKLRYCSLSAQALCSLQRSLDKSGCQ 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2784677 2788075 + CmaCh08G004900.1 Cma08g00490 299185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00490 392 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 372 - -
Cma08g00490 392 PANTHER PROTEIN PHOSPHATASE 2C 1 372 IPR015655 GO:0004722|GO:0006470
Cma08g00490 392 SMART PP2C_SIG_2 97 353 IPR001932 -
Cma08g00490 392 CDD PP2Cc 82 353 IPR001932 -
Cma08g00490 392 SMART PP2C_4 72 351 IPR001932 -
Cma08g00490 392 Pfam Protein phosphatase 2C 92 344 IPR001932 -
Cma08g00490 392 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Cma08g00490 392 ProSiteProfiles PPM-type phosphatase domain profile. 82 353 IPR001932 -
Cma08g00490 392 Gene3D - 62 360 IPR036457 -
Cma08g00490 392 SUPERFAMILY PP2C-like 75 355 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00490 Cma17g01008 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00490 Cma-Chr8:2784677 Cma09g00041 Cma-Chr9:172537 2.85E-103 dispersed
Cma17g01008 Cma-Chr17:7344665 Cma08g00490 Cma-Chr8:2784677 0 wgd
Cma08g00490 Cma-Chr8:2784677 Cma08g01298 Cma-Chr8:7867236 6.75E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00490 K14803 - csv:101216626 629.787