Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00518 ATGGAAATGAAATTCTCACCAACGGTGCTTGGGAAGGAGGACCTACGGTGGGATTCAAGTGGCCTCCGGAAATTTGTTAAAGAATTGATGTCCGGTCTGATCTCCGAGGCCTCCACCGAAAAAAAAATGGCTGAACTCAACGCCATTTTATACCGTTCTTCCTTTCCCTCCATTTTCGGCTACACGATTCGCCTCAGTGAAATTTTCGGGAGGGCGACCCGGTCTATTTTGGGCTTTTTTATCATGATGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGCCTTTTTCTCAACCTCGTATTAGCTCTGATACGATCGTAGGTTTGGTTGTTGGGAACTTCATAAGGAAACAACTCGATTTATCAACGCTTAAGACGCTGCGTTATATCGTTGACTTTGGTATGATATGCTATATGTTCTCGCTGGGATTGGAGATGGATCCATACATACTCTTCAAAGCACCTACACGTGATGCTAAAGTAGCTTACGCCGGGATGATTTCGACACTGGTCTTAGCCTGTTCCATAACCCCATTTATCAGTTTTTCAAAGACAAAAGAGATCAGTTTCATCCTCTCCCTCTCAACTGTCCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATCACCCGTCTTAAAATAGGCAAGTCGGATATAGGTCGACTCGTTATTGCTGCTGGGATGCATTCTGATTTTATATCCACTCTCATTATCTGTATTGGTTATCTCTTTTGCAAATGTCAAGAGGTACGCCTCTCCACGACACGAGGTTTTCAATTAGGTTTTGTGTTATTGATACAGATGATAGTTGCAGCGAAGGTTTCACCTGTATTTATGAACTGGGTTAATAATGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCAGCTGCCCTACTATACTCGGTTACAATCCGATTCTCAGTGCTTTCTTAGCGGGAACGTTTTTACCTCGAGAAGGTCGAGTATCGAGATGGGCTATTGGAAAAATTAACTACCTGCTTAGTACCGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGCTGAATCCAAGTGGAGTGACTTTGAACCTGGACAAATAATGACATGGGTCAGGTTGATTCTTCTTTTTGTCATTGCAACCGTAGGAAAAGTTGTTGGTACTGTGATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCACATATACTTGGCTATTGCTGCGAAAACCGCTGGAAAGACGACGACTTCTACGAGCATTGGGATGGTAATTGTAATCTTCTTCACAATCGTGCATGCGCCAAAAGTTGTCGCACATATAATCAAAAGGGCAAGGAAACGTACACCTACGCATCGAATGGCGCTCCAATTGCTTGATCCATCAAGCGAGCTTAAGATCTTGTTATGTATACATGGACTTCAGAACACTACAGCAGCCATTAACATCATGGAGATTTCTCGGGGGATGGCTAAACCTGGAGTTGTTGTATATCTCACAGACATGATTGAACTTACAGATGAAATAGCAGCCACGTTAGTGCAGGTTGAGGGAGAGGGCACCCTGACTGTAACTCACGCGGAAGTGAGACAAATGAGAGACCAAATTACTGCTGTGGTTCAGAGCTATGTAGACGAAAATGGAGACGGAATTACACTTGGAAGAATGCTAGCTCTCTCAGCATTCAATTCTATGGCTCAGGACATATGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTTCACAAGAGCCAGCGTGCTGATGGGTCTTTGAGTGAGGGCAATGTGGGTTTTCGCTACGTCAACCGCAAGGTTCTCAGGAATGCCCCATGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGAACAGTAGAGAAAATTTCGAGATCGTATGCATCTCAGAATGTGGCAGTCATCTTCATCAGCGGTAAAGATGACCGAGAAGCCTTAGCGTATGCGGCTCGAGTAGCAAGGCATCCTGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGCTGCAGAGAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACTAGACGATGAATGTTTTGCTACTTTTTACGAACGACACGTGGCTGGTGGGCACGTTGCTTATGTCGAAAAGCACCTTGCGAGTTCTGCGGAGACATACTCTACATTGAAATTACTGGAAGGGCAATATGCACTCATAATCGTCGGTCGAGGTGGGAAGGTGAACACGGTTTTAACTTTTGGGATGAATGACTGGCAACAATGTCCAGAACTTGGTCCTATAGGGGATGTTCTTTCGGGGTCTGAATTCTCTGTTAGGACCTCGGTATTAGTCATCCAACAACACAATCTAAAAGGAGAACTAGATGGACTTGATGATGATTTTTCTATTATGTAG 2502 44.76 MEMKFSPTVLGKEDLRWDSSGLRKFVKELMSGLISEASTEKKMAELNAILYRSSFPSIFGYTIRLSEIFGRATRSILGFFIMMGLCNGVHYLLRPFSQPRISSDTIVGLVVGNFIRKQLDLSTLKTLRYIVDFGMICYMFSLGLEMDPYILFKAPTRDAKVAYAGMISTLVLACSITPFISFSKTKEISFILSLSTVLSSTASPVLTRLITRLKIGKSDIGRLVIAAGMHSDFISTLIICIGYLFCKCQEVRLSTTRGFQLGFVLLIQMIVAAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCSCPTILGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLSTVFYPIFFFWMGAESKWSDFEPGQIMTWVRLILLFVIATVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKTTTSTSIGMVIVIFFTIVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELKILLCIHGLQNTTAAINIMEISRGMAKPGVVVYLTDMIELTDEIAATLVQVEGEGTLTVTHAEVRQMRDQITAVVQSYVDENGDGITLGRMLALSAFNSMAQDICILAEELMGALIILPFHKSQRADGSLSEGNVGFRYVNRKVLRNAPCSVGILVDRGLGTVEKISRSYASQNVAVIFISGKDDREALAYAARVARHPGVKLSVIRFLVDAAAENAARRAGTYRISVAEQEEEMRLDDECFATFYERHVAGGHVAYVEKHLASSAETYSTLKLLEGQYALIIVGRGGKVNTVLTFGMNDWQQCPELGPIGDVLSGSEFSVRTSVLVIQQHNLKGELDGLDDDFSIM 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2995216 3000685 + CmaCh08G005180.1 Cma08g00518 299213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00518 833 Gene3D - 72 472 IPR038770 -
Cma08g00518 833 Pfam Sodium/hydrogen exchanger family 86 461 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma08g00518 833 PANTHER CATION/H(+) ANTIPORTER 28 65 830 - -
Cma08g00518 833 Gene3D - 487 786 - -
Cma08g00518 833 PANTHER CATION/H + ANTIPORTER 65 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00518 Cma-Chr8:2995216 Cma02g00628 Cma-Chr2:3792971 1.28E-102 dispersed
Cma19g00370 Cma-Chr19:4185758 Cma08g00518 Cma-Chr8:2995216 3.80E-94 transposed
Cma17g00962 Cma-Chr17:7144723 Cma08g00518 Cma-Chr8:2995216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00518 - - csv:101211645 1351.27